Results 41 - 60 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29490 | 3' | -62.2 | NC_006151.1 | + | 65065 | 0.67 | 0.569724 |
Target: 5'- gCCCGUUaauaaagUCCAUCAGCaCCCgCGuGGGCc -3' miRNA: 3'- -GGGUAG-------GGGUAGUUG-GGGgGCcCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 54612 | 0.67 | 0.589974 |
Target: 5'- uCCCGgugCgCCGggcGCgCCCCGGGGGg -3' miRNA: 3'- -GGGUa--GgGGUaguUGgGGGGCCCCCg -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 32329 | 0.67 | 0.598693 |
Target: 5'- uCCgCGUCCCCAUCu-CCgaggCCCGaggcgccGGGGCu -3' miRNA: 3'- -GG-GUAGGGGUAGuuGGg---GGGC-------CCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 17800 | 0.67 | 0.599663 |
Target: 5'- gCCC--CCCCG--GACCCCCCcuccugggcgcgGcGGGGCg -3' miRNA: 3'- -GGGuaGGGGUagUUGGGGGG------------C-CCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 111818 | 0.67 | 0.622994 |
Target: 5'- gCCGUCcugCCCGUgGACCUggaagacgcaccgcgUCgGGGGGCg -3' miRNA: 3'- gGGUAG---GGGUAgUUGGG---------------GGgCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 39997 | 0.67 | 0.620074 |
Target: 5'- gCCGUgcucugggacuuugcCCCCuUCGagaccagcguccgcGCCgCCgCCGGGGGCg -3' miRNA: 3'- gGGUA---------------GGGGuAGU--------------UGG-GG-GGCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 32560 | 0.67 | 0.6191 |
Target: 5'- uCCCGUCuCCCG--GGCaCCCgCGGccGGGCg -3' miRNA: 3'- -GGGUAG-GGGUagUUG-GGGgGCC--CCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 36595 | 0.67 | 0.6191 |
Target: 5'- gCCCGcuUCCCCAgcc-UCCCCCGccgccGGGCc -3' miRNA: 3'- -GGGU--AGGGGUaguuGGGGGGCc----CCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 23225 | 0.67 | 0.609374 |
Target: 5'- cUCC-UCCUCgGUCAccuccuCgCCCUCGGGGGCc -3' miRNA: 3'- -GGGuAGGGG-UAGUu-----G-GGGGGCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 5421 | 0.67 | 0.609374 |
Target: 5'- gUCCGUCCUCGUC--CUUCUCGGGGccGCg -3' miRNA: 3'- -GGGUAGGGGUAGuuGGGGGGCCCC--CG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 36454 | 0.67 | 0.609374 |
Target: 5'- uCCCggCCCCucggCAGCCCCgCGGagauGGUc -3' miRNA: 3'- -GGGuaGGGGua--GUUGGGGgGCCc---CCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 114668 | 0.67 | 0.606459 |
Target: 5'- gCCCGUgagcgccgcgaaggCCUCGugcUCGAagggcgcgUCCCCGGGGGCg -3' miRNA: 3'- -GGGUA--------------GGGGU---AGUUg-------GGGGGCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 91120 | 0.67 | 0.599663 |
Target: 5'- gCCCuUCgCCAcggcggcgagcUUGGCCaCCUGGGGGCg -3' miRNA: 3'- -GGGuAGgGGU-----------AGUUGGgGGGCCCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 34061 | 0.67 | 0.599663 |
Target: 5'- uUCGUCuCCCGg-AGCgCCCCCGGGGu- -3' miRNA: 3'- gGGUAG-GGGUagUUG-GGGGGCCCCcg -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 12822 | 0.68 | 0.542058 |
Target: 5'- cCCCucUCCCCG-CcGCCCCCCGc-GGCc -3' miRNA: 3'- -GGGu-AGGGGUaGuUGGGGGGCccCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 142686 | 0.68 | 0.542058 |
Target: 5'- cCCCccCCCCA-CAACUCUCUGgucuGGGGCc -3' miRNA: 3'- -GGGuaGGGGUaGUUGGGGGGC----CCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 46811 | 0.68 | 0.54585 |
Target: 5'- gCCCGUcgcccucugccucugCCCCcgagaccgCcGCCCCCCG-GGGCg -3' miRNA: 3'- -GGGUA---------------GGGGua------GuUGGGGGGCcCCCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 77878 | 0.68 | 0.551552 |
Target: 5'- -gCAUCCCCggCGugcGCCCCCCGcucaGcGGCg -3' miRNA: 3'- ggGUAGGGGuaGU---UGGGGGGCc---C-CCG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 23131 | 0.68 | 0.561096 |
Target: 5'- gCCCcUCCuCCGUCGccggGCCCUCgGcGGGaGCg -3' miRNA: 3'- -GGGuAGG-GGUAGU----UGGGGGgC-CCC-CG- -5' |
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29490 | 3' | -62.2 | NC_006151.1 | + | 81334 | 0.68 | 0.541112 |
Target: 5'- cCCCcUCgUCCGUCGccGCCgccgcgcccggggCCCCGGcGGGCg -3' miRNA: 3'- -GGGuAG-GGGUAGU--UGG-------------GGGGCC-CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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