miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 65065 0.67 0.569724
Target:  5'- gCCCGUUaauaaagUCCAUCAGCaCCCgCGuGGGCc -3'
miRNA:   3'- -GGGUAG-------GGGUAGUUG-GGGgGCcCCCG- -5'
29490 3' -62.2 NC_006151.1 + 54612 0.67 0.589974
Target:  5'- uCCCGgugCgCCGggcGCgCCCCGGGGGg -3'
miRNA:   3'- -GGGUa--GgGGUaguUGgGGGGCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 32329 0.67 0.598693
Target:  5'- uCCgCGUCCCCAUCu-CCgaggCCCGaggcgccGGGGCu -3'
miRNA:   3'- -GG-GUAGGGGUAGuuGGg---GGGC-------CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 17800 0.67 0.599663
Target:  5'- gCCC--CCCCG--GACCCCCCcuccugggcgcgGcGGGGCg -3'
miRNA:   3'- -GGGuaGGGGUagUUGGGGGG------------C-CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 111818 0.67 0.622994
Target:  5'- gCCGUCcugCCCGUgGACCUggaagacgcaccgcgUCgGGGGGCg -3'
miRNA:   3'- gGGUAG---GGGUAgUUGGG---------------GGgCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 39997 0.67 0.620074
Target:  5'- gCCGUgcucugggacuuugcCCCCuUCGagaccagcguccgcGCCgCCgCCGGGGGCg -3'
miRNA:   3'- gGGUA---------------GGGGuAGU--------------UGG-GG-GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 32560 0.67 0.6191
Target:  5'- uCCCGUCuCCCG--GGCaCCCgCGGccGGGCg -3'
miRNA:   3'- -GGGUAG-GGGUagUUG-GGGgGCC--CCCG- -5'
29490 3' -62.2 NC_006151.1 + 36595 0.67 0.6191
Target:  5'- gCCCGcuUCCCCAgcc-UCCCCCGccgccGGGCc -3'
miRNA:   3'- -GGGU--AGGGGUaguuGGGGGGCc----CCCG- -5'
29490 3' -62.2 NC_006151.1 + 23225 0.67 0.609374
Target:  5'- cUCC-UCCUCgGUCAccuccuCgCCCUCGGGGGCc -3'
miRNA:   3'- -GGGuAGGGG-UAGUu-----G-GGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 5421 0.67 0.609374
Target:  5'- gUCCGUCCUCGUC--CUUCUCGGGGccGCg -3'
miRNA:   3'- -GGGUAGGGGUAGuuGGGGGGCCCC--CG- -5'
29490 3' -62.2 NC_006151.1 + 36454 0.67 0.609374
Target:  5'- uCCCggCCCCucggCAGCCCCgCGGagauGGUc -3'
miRNA:   3'- -GGGuaGGGGua--GUUGGGGgGCCc---CCG- -5'
29490 3' -62.2 NC_006151.1 + 114668 0.67 0.606459
Target:  5'- gCCCGUgagcgccgcgaaggCCUCGugcUCGAagggcgcgUCCCCGGGGGCg -3'
miRNA:   3'- -GGGUA--------------GGGGU---AGUUg-------GGGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 91120 0.67 0.599663
Target:  5'- gCCCuUCgCCAcggcggcgagcUUGGCCaCCUGGGGGCg -3'
miRNA:   3'- -GGGuAGgGGU-----------AGUUGGgGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 34061 0.67 0.599663
Target:  5'- uUCGUCuCCCGg-AGCgCCCCCGGGGu- -3'
miRNA:   3'- gGGUAG-GGGUagUUG-GGGGGCCCCcg -5'
29490 3' -62.2 NC_006151.1 + 12822 0.68 0.542058
Target:  5'- cCCCucUCCCCG-CcGCCCCCCGc-GGCc -3'
miRNA:   3'- -GGGu-AGGGGUaGuUGGGGGGCccCCG- -5'
29490 3' -62.2 NC_006151.1 + 142686 0.68 0.542058
Target:  5'- cCCCccCCCCA-CAACUCUCUGgucuGGGGCc -3'
miRNA:   3'- -GGGuaGGGGUaGUUGGGGGGC----CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 46811 0.68 0.54585
Target:  5'- gCCCGUcgcccucugccucugCCCCcgagaccgCcGCCCCCCG-GGGCg -3'
miRNA:   3'- -GGGUA---------------GGGGua------GuUGGGGGGCcCCCG- -5'
29490 3' -62.2 NC_006151.1 + 77878 0.68 0.551552
Target:  5'- -gCAUCCCCggCGugcGCCCCCCGcucaGcGGCg -3'
miRNA:   3'- ggGUAGGGGuaGU---UGGGGGGCc---C-CCG- -5'
29490 3' -62.2 NC_006151.1 + 23131 0.68 0.561096
Target:  5'- gCCCcUCCuCCGUCGccggGCCCUCgGcGGGaGCg -3'
miRNA:   3'- -GGGuAGG-GGUAGU----UGGGGGgC-CCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 81334 0.68 0.541112
Target:  5'- cCCCcUCgUCCGUCGccGCCgccgcgcccggggCCCCGGcGGGCg -3'
miRNA:   3'- -GGGuAG-GGGUAGU--UGG-------------GGGGCC-CCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.