miRNA display CGI


Results 61 - 80 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 45516 0.68 0.504677
Target:  5'- cCCCAggagCCGUCGACCCaCCgCGGgaGGGCc -3'
miRNA:   3'- -GGGUagg-GGUAGUUGGG-GG-GCC--CCCG- -5'
29490 3' -62.2 NC_006151.1 + 45254 0.68 0.504677
Target:  5'- cCCCuugcUCCCUGUCccagUCCCCCGucGGGGUg -3'
miRNA:   3'- -GGGu---AGGGGUAGuu--GGGGGGC--CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 8170 0.68 0.504677
Target:  5'- gCCCAaaauggaCCUCG--GGCCgggaCCCCGGGGGCg -3'
miRNA:   3'- -GGGUa------GGGGUagUUGG----GGGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 58052 0.68 0.501917
Target:  5'- gCCCAgcgcgcaguaguagUCCUCGUCcGCgCCCUCGcGGGCg -3'
miRNA:   3'- -GGGU--------------AGGGGUAGuUG-GGGGGCcCCCG- -5'
29490 3' -62.2 NC_006151.1 + 26149 0.68 0.52324
Target:  5'- cUCCAcCCCCAUCucccuUCCCCaCGaGGGCc -3'
miRNA:   3'- -GGGUaGGGGUAGuu---GGGGG-GCcCCCG- -5'
29490 3' -62.2 NC_006151.1 + 62745 0.68 0.52324
Target:  5'- gCCCGUCCCCAUCGuCCCaCUuuGcGGCc -3'
miRNA:   3'- -GGGUAGGGGUAGUuGGG-GGgcCcCCG- -5'
29490 3' -62.2 NC_006151.1 + 142765 0.68 0.561096
Target:  5'- cCCCGggcccCCCCA-CAACUCUCUGgucuGGGGCc -3'
miRNA:   3'- -GGGUa----GGGGUaGUUGGGGGGC----CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 23131 0.68 0.561096
Target:  5'- gCCCcUCCuCCGUCGccggGCCCUCgGcGGGaGCg -3'
miRNA:   3'- -GGGuAGG-GGUAGU----UGGGGGgC-CCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 77878 0.68 0.551552
Target:  5'- -gCAUCCCCggCGugcGCCCCCCGcucaGcGGCg -3'
miRNA:   3'- ggGUAGGGGuaGU---UGGGGGGCc---C-CCG- -5'
29490 3' -62.2 NC_006151.1 + 46811 0.68 0.54585
Target:  5'- gCCCGUcgcccucugccucugCCCCcgagaccgCcGCCCCCCG-GGGCg -3'
miRNA:   3'- -GGGUA---------------GGGGua------GuUGGGGGGCcCCCG- -5'
29490 3' -62.2 NC_006151.1 + 142686 0.68 0.542058
Target:  5'- cCCCccCCCCA-CAACUCUCUGgucuGGGGCc -3'
miRNA:   3'- -GGGuaGGGGUaGUUGGGGGGC----CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 12822 0.68 0.542058
Target:  5'- cCCCucUCCCCG-CcGCCCCCCGc-GGCc -3'
miRNA:   3'- -GGGu-AGGGGUaGuUGGGGGGCccCCG- -5'
29490 3' -62.2 NC_006151.1 + 81334 0.68 0.541112
Target:  5'- cCCCcUCgUCCGUCGccGCCgccgcgcccggggCCCCGGcGGGCg -3'
miRNA:   3'- -GGGuAG-GGGUAGU--UGG-------------GGGGCC-CCCG- -5'
29490 3' -62.2 NC_006151.1 + 28571 0.68 0.541112
Target:  5'- uCCCGggagCCCgCAUUGGCCggcgcguCCCCGGaGGCg -3'
miRNA:   3'- -GGGUa---GGG-GUAGUUGG-------GGGGCCcCCG- -5'
29490 3' -62.2 NC_006151.1 + 91929 0.68 0.532619
Target:  5'- gCCAUCUCCA-CG--CCgCCGGGGGUc -3'
miRNA:   3'- gGGUAGGGGUaGUugGGgGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 37491 0.68 0.52324
Target:  5'- gCCCGUgCCCGUCuucAUCCCggagaUGGGGGa -3'
miRNA:   3'- -GGGUAgGGGUAGu--UGGGGg----GCCCCCg -5'
29490 3' -62.2 NC_006151.1 + 113089 0.69 0.477387
Target:  5'- gCCGUCgCC----GCCgCCaCCGGGGGCg -3'
miRNA:   3'- gGGUAGgGGuaguUGG-GG-GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 36983 0.69 0.486405
Target:  5'- aCCUcUCCCCGgcccgcucgcccUCcGCCCCCCGGGcccccGCc -3'
miRNA:   3'- -GGGuAGGGGU------------AGuUGGGGGGCCCc----CG- -5'
29490 3' -62.2 NC_006151.1 + 39242 0.69 0.486405
Target:  5'- aCCGggcgCCCCGacaucggccgccUCAACgCCCaGGGGGUg -3'
miRNA:   3'- gGGUa---GGGGU------------AGUUGgGGGgCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 30572 0.69 0.477387
Target:  5'- gCCGUCCCg--CGGCCCCgUCGGGcGCa -3'
miRNA:   3'- gGGUAGGGguaGUUGGGG-GGCCCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.