miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 3' -62.2 NC_006151.1 + 64523 0.66 0.66773
Target:  5'- gCCAaaggCCgCcgCGGCCgCgUCGGGGGCg -3'
miRNA:   3'- gGGUa---GGgGuaGUUGG-GgGGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 20421 0.66 0.66773
Target:  5'- cCCCcUCCUCGUCcuCCUCCUcuucgucggaGcGGGGCu -3'
miRNA:   3'- -GGGuAGGGGUAGuuGGGGGG----------C-CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 124021 0.66 0.66773
Target:  5'- cCCCggCCCC-UCGGaggCCCCCGacGGCg -3'
miRNA:   3'- -GGGuaGGGGuAGUUg--GGGGGCccCCG- -5'
29490 3' -62.2 NC_006151.1 + 47416 0.66 0.677406
Target:  5'- gCCCggCCaCCAUCugaguGCCCaaCCGGGgcccGGCg -3'
miRNA:   3'- -GGGuaGG-GGUAGu----UGGGg-GGCCC----CCG- -5'
29490 3' -62.2 NC_006151.1 + 38859 0.66 0.677406
Target:  5'- aCCCAcaCgCCG-CGGCCCUCCGaGGcGGCc -3'
miRNA:   3'- -GGGUa-GgGGUaGUUGGGGGGC-CC-CCG- -5'
29490 3' -62.2 NC_006151.1 + 123965 0.66 0.648306
Target:  5'- gCCAcCCCCAaCGACgUCUCCGcGGaGGCg -3'
miRNA:   3'- gGGUaGGGGUaGUUG-GGGGGC-CC-CCG- -5'
29490 3' -62.2 NC_006151.1 + 53520 0.66 0.648306
Target:  5'- gCCGcgcgCCCCGUgAGCCgCUCCaGGGcGCg -3'
miRNA:   3'- gGGUa---GGGGUAgUUGG-GGGGcCCC-CG- -5'
29490 3' -62.2 NC_006151.1 + 38625 0.66 0.628836
Target:  5'- ---cUCUCCGgcgCGGCCCUCCGcGGGGa -3'
miRNA:   3'- ggguAGGGGUa--GUUGGGGGGC-CCCCg -5'
29490 3' -62.2 NC_006151.1 + 46563 0.66 0.628836
Target:  5'- gCCCAggcgcUCCCCGcgCAggGCCCgaCGGGcGGCc -3'
miRNA:   3'- -GGGU-----AGGGGUa-GU--UGGGggGCCC-CCG- -5'
29490 3' -62.2 NC_006151.1 + 35220 0.66 0.628836
Target:  5'- gCCCAUUggCCCGggCGagccgagaugGCCgCCgCGGGGGCc -3'
miRNA:   3'- -GGGUAG--GGGUa-GU----------UGGgGG-GCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 141574 0.66 0.628836
Target:  5'- aUCC-UCCgCCGcUCcuCCCCCCGGGcgagagccgcccGGCg -3'
miRNA:   3'- -GGGuAGG-GGU-AGuuGGGGGGCCC------------CCG- -5'
29490 3' -62.2 NC_006151.1 + 41540 0.66 0.628836
Target:  5'- cCCCcgCCCgCG--GACCCCCgGugcgacggaaGGGGCa -3'
miRNA:   3'- -GGGuaGGG-GUagUUGGGGGgC----------CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 81787 0.66 0.637599
Target:  5'- gCUCGgcgCgCCCGUCGaagaGCCCggcgaagCCCGcGGGGCa -3'
miRNA:   3'- -GGGUa--G-GGGUAGU----UGGG-------GGGC-CCCCG- -5'
29490 3' -62.2 NC_006151.1 + 82150 0.66 0.638573
Target:  5'- gCCCGgcggCUCCAggucCGAgCCgagcgCCGGGGGCg -3'
miRNA:   3'- -GGGUa---GGGGUa---GUUgGGg----GGCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 86285 0.66 0.638573
Target:  5'- cCCCuucuUCCUCggcgucGUCAACUgCCCgcagcuGGGGGCc -3'
miRNA:   3'- -GGGu---AGGGG------UAGUUGGgGGG------CCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 108301 0.66 0.638573
Target:  5'- cCCCGgcggcgacCCCCAc--GCCCCCCGcgcccGGGCc -3'
miRNA:   3'- -GGGUa-------GGGGUaguUGGGGGGCc----CCCG- -5'
29490 3' -62.2 NC_006151.1 + 83082 0.66 0.648306
Target:  5'- gUCCAUCgCCCAcgCGugCaCCUCGaGcGGGCg -3'
miRNA:   3'- -GGGUAG-GGGUa-GUugG-GGGGC-C-CCCG- -5'
29490 3' -62.2 NC_006151.1 + 83413 0.66 0.648306
Target:  5'- gCCA-CCaCCAgguuGCCgCCgGGGGGCu -3'
miRNA:   3'- gGGUaGG-GGUagu-UGGgGGgCCCCCG- -5'
29490 3' -62.2 NC_006151.1 + 10305 0.66 0.648306
Target:  5'- cCCgCGUCCCCggcGUCAucacgcgggACCCCCCGGu--- -3'
miRNA:   3'- -GG-GUAGGGG---UAGU---------UGGGGGGCCcccg -5'
29490 3' -62.2 NC_006151.1 + 50358 0.66 0.648306
Target:  5'- uCCCG-CCgCGUCu-CCgCCggCGGGGGCg -3'
miRNA:   3'- -GGGUaGGgGUAGuuGGgGG--GCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.