miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29490 5' -54 NC_006151.1 + 27484 0.66 0.945456
Target:  5'- gGggUCGgCGGG--GUG-GUGGGAACGg -3'
miRNA:   3'- -UuuGGUgGCCCaaCACuCACCCUUGC- -5'
29490 5' -54 NC_006151.1 + 5827 0.66 0.940824
Target:  5'- aGAGCCggaggaggagGCCGGGgaGgcugcgGAG-GGGGACGa -3'
miRNA:   3'- -UUUGG----------UGGCCCaaCa-----CUCaCCCUUGC- -5'
29490 5' -54 NC_006151.1 + 49514 0.67 0.9329
Target:  5'- -cACCGCCggcggaggacgaggaGGGggGagggGGGUGGGAugGa -3'
miRNA:   3'- uuUGGUGG---------------CCCaaCa---CUCACCCUugC- -5'
29490 5' -54 NC_006151.1 + 29263 0.67 0.929232
Target:  5'- gGAAuCCcCCGGGacggGUGAgucgggagggugggGUGGGAGCGg -3'
miRNA:   3'- -UUU-GGuGGCCCaa--CACU--------------CACCCUUGC- -5'
29490 5' -54 NC_006151.1 + 27945 0.67 0.919818
Target:  5'- cGAUCGCgCGGGgUGggGAGggaggGGGGACGg -3'
miRNA:   3'- uUUGGUG-GCCCaACa-CUCa----CCCUUGC- -5'
29490 5' -54 NC_006151.1 + 822 0.67 0.907821
Target:  5'- uGGCaGCgGGGgaGgcuggGAGUGGGGACGg -3'
miRNA:   3'- uUUGgUGgCCCaaCa----CUCACCCUUGC- -5'
29490 5' -54 NC_006151.1 + 42255 0.69 0.833754
Target:  5'- cGGCCcCCGGGgaGcgggGGGUGGGAucGCGa -3'
miRNA:   3'- uUUGGuGGCCCaaCa---CUCACCCU--UGC- -5'
29490 5' -54 NC_006151.1 + 72560 0.72 0.690115
Target:  5'- cGGCCGCgCGGGa---GGGUGGGGGCGg -3'
miRNA:   3'- uUUGGUG-GCCCaacaCUCACCCUUGC- -5'
29490 5' -54 NC_006151.1 + 91677 0.74 0.555002
Target:  5'- ---gCGCCGGGUggugcgcGUGGGUGGGGugGc -3'
miRNA:   3'- uuugGUGGCCCAa------CACUCACCCUugC- -5'
29490 5' -54 NC_006151.1 + 88287 0.79 0.328266
Target:  5'- -cGCCGCCGGGUgGUaGAcGUGGGGGCGc -3'
miRNA:   3'- uuUGGUGGCCCAaCA-CU-CACCCUUGC- -5'
29490 5' -54 NC_006151.1 + 44142 1.06 0.005914
Target:  5'- gAAACCACCGGGUUGUGAGUGGGAACGu -3'
miRNA:   3'- -UUUGGUGGCCCAACACUCACCCUUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.