Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29490 | 5' | -54 | NC_006151.1 | + | 91677 | 0.74 | 0.555002 |
Target: 5'- ---gCGCCGGGUggugcgcGUGGGUGGGGugGc -3' miRNA: 3'- uuugGUGGCCCAa------CACUCACCCUugC- -5' |
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29490 | 5' | -54 | NC_006151.1 | + | 88287 | 0.79 | 0.328266 |
Target: 5'- -cGCCGCCGGGUgGUaGAcGUGGGGGCGc -3' miRNA: 3'- uuUGGUGGCCCAaCA-CU-CACCCUUGC- -5' |
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29490 | 5' | -54 | NC_006151.1 | + | 72560 | 0.72 | 0.690115 |
Target: 5'- cGGCCGCgCGGGa---GGGUGGGGGCGg -3' miRNA: 3'- uUUGGUG-GCCCaacaCUCACCCUUGC- -5' |
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29490 | 5' | -54 | NC_006151.1 | + | 49514 | 0.67 | 0.9329 |
Target: 5'- -cACCGCCggcggaggacgaggaGGGggGagggGGGUGGGAugGa -3' miRNA: 3'- uuUGGUGG---------------CCCaaCa---CUCACCCUugC- -5' |
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29490 | 5' | -54 | NC_006151.1 | + | 44142 | 1.06 | 0.005914 |
Target: 5'- gAAACCACCGGGUUGUGAGUGGGAACGu -3' miRNA: 3'- -UUUGGUGGCCCAACACUCACCCUUGC- -5' |
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29490 | 5' | -54 | NC_006151.1 | + | 42255 | 0.69 | 0.833754 |
Target: 5'- cGGCCcCCGGGgaGcgggGGGUGGGAucGCGa -3' miRNA: 3'- uUUGGuGGCCCaaCa---CUCACCCU--UGC- -5' |
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29490 | 5' | -54 | NC_006151.1 | + | 29263 | 0.67 | 0.929232 |
Target: 5'- gGAAuCCcCCGGGacggGUGAgucgggagggugggGUGGGAGCGg -3' miRNA: 3'- -UUU-GGuGGCCCaa--CACU--------------CACCCUUGC- -5' |
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29490 | 5' | -54 | NC_006151.1 | + | 27945 | 0.67 | 0.919818 |
Target: 5'- cGAUCGCgCGGGgUGggGAGggaggGGGGACGg -3' miRNA: 3'- uUUGGUG-GCCCaACa-CUCa----CCCUUGC- -5' |
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29490 | 5' | -54 | NC_006151.1 | + | 27484 | 0.66 | 0.945456 |
Target: 5'- gGggUCGgCGGG--GUG-GUGGGAACGg -3' miRNA: 3'- -UuuGGUgGCCCaaCACuCACCCUUGC- -5' |
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29490 | 5' | -54 | NC_006151.1 | + | 5827 | 0.66 | 0.940824 |
Target: 5'- aGAGCCggaggaggagGCCGGGgaGgcugcgGAG-GGGGACGa -3' miRNA: 3'- -UUUGG----------UGGCCCaaCa-----CUCaCCCUUGC- -5' |
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29490 | 5' | -54 | NC_006151.1 | + | 822 | 0.67 | 0.907821 |
Target: 5'- uGGCaGCgGGGgaGgcuggGAGUGGGGACGg -3' miRNA: 3'- uUUGgUGgCCCaaCa----CUCACCCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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