Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29491 | 5' | -59.4 | NC_006151.1 | + | 139360 | 0.66 | 0.733902 |
|
Target: 5'- cUCU-GCCUG-CUGGUAGG-GGG-CGu -3' miRNA: 3'- aAGAuCGGACgGACCAUCCgCCCaGC- -5' |
|||||||
| 29491 | 5' | -59.4 | NC_006151.1 | + | 136977 | 0.66 | 0.724095 |
|
Target: 5'- -gCUGGCCgccgcGCC-GGgcGGCGGG-CGc -3' miRNA: 3'- aaGAUCGGa----CGGaCCauCCGCCCaGC- -5' |
|||||||
| 29491 | 5' | -59.4 | NC_006151.1 | + | 27355 | 0.68 | 0.612982 |
|
Target: 5'- gUCgugGGCCgggGCCc---GGGCGGGUCGa -3' miRNA: 3'- aAGa--UCGGa--CGGaccaUCCGCCCAGC- -5' |
|||||||
| 29491 | 5' | -59.4 | NC_006151.1 | + | 82872 | 0.69 | 0.552392 |
|
Target: 5'- aUCUGGCCgcgGCgCgGGUGGGaggggcgaGGGUCa -3' miRNA: 3'- aAGAUCGGa--CG-GaCCAUCCg-------CCCAGc -5' |
|||||||
| 29491 | 5' | -59.4 | NC_006151.1 | + | 141614 | 0.69 | 0.522742 |
|
Target: 5'- ---gAGgCUGCCgGGaucGGGCGGGUCGc -3' miRNA: 3'- aagaUCgGACGGaCCa--UCCGCCCAGC- -5' |
|||||||
| 29491 | 5' | -59.4 | NC_006151.1 | + | 43838 | 1.07 | 0.001571 |
|
Target: 5'- cUUCUAGCCUGCCUGGUAGGCGGGUCGg -3' miRNA: 3'- -AAGAUCGGACGGACCAUCCGCCCAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home