Results 81 - 100 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29492 | 3' | -57.6 | NC_006151.1 | + | 85597 | 0.69 | 0.655637 |
Target: 5'- uUCCAgcucggCgCGCUCGUgCCCaacgcgccGCCGCCGCGc -3' miRNA: 3'- -AGGUa-----G-GUGAGUAgGGG--------UGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 32238 | 0.69 | 0.655637 |
Target: 5'- cUCCuggCCGCggCGaCCgCCGCCGCCGCu -3' miRNA: 3'- -AGGua-GGUGa-GUaGG-GGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 58554 | 0.69 | 0.645461 |
Target: 5'- gUCGUCUcCUCuUCgCCGCCGCCGCc -3' miRNA: 3'- aGGUAGGuGAGuAGgGGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 40387 | 0.69 | 0.645461 |
Target: 5'- cCCGUCCucCUCcUCCUCugCGuCCGCGg -3' miRNA: 3'- aGGUAGGu-GAGuAGGGGugGU-GGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 36782 | 0.69 | 0.645461 |
Target: 5'- cCCAacUCCaACUCcaacUCCaCCACCACCGUc -3' miRNA: 3'- aGGU--AGG-UGAGu---AGG-GGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 13040 | 0.69 | 0.645461 |
Target: 5'- cCCGgcggUgACcCAUCCCCACCccGCCGCGc -3' miRNA: 3'- aGGUa---GgUGaGUAGGGGUGG--UGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 109429 | 0.69 | 0.645461 |
Target: 5'- aCCA-CCGC-CggCCCCACCACCuucGCGg -3' miRNA: 3'- aGGUaGGUGaGuaGGGGUGGUGG---CGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 134501 | 0.69 | 0.675926 |
Target: 5'- cUUCGggCGCUCGUCCCUcaACCuCCGCGg -3' miRNA: 3'- -AGGUagGUGAGUAGGGG--UGGuGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 50821 | 0.69 | 0.686021 |
Target: 5'- -gCGUCCACgccUCggCCCgCGCCGCCGUc -3' miRNA: 3'- agGUAGGUG---AGuaGGG-GUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 109393 | 0.69 | 0.645461 |
Target: 5'- aCCA-CCGC-CggCCCCACCACCuucGCGg -3' miRNA: 3'- aGGUaGGUGaGuaGGGGUGGUGG---CGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 26085 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 26050 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 26015 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 25980 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 25911 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 25876 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 25841 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 25806 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 25771 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 61662 | 0.69 | 0.686021 |
Target: 5'- gCCAgCCGCUCGUggcCCCCGCC-CUGUu -3' miRNA: 3'- aGGUaGGUGAGUA---GGGGUGGuGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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