Results 41 - 60 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29492 | 3' | -57.6 | NC_006151.1 | + | 62696 | 0.7 | 0.625084 |
Target: 5'- cCUGUCC-CUUGUCCCCGgucccgccCCGCCGCc -3' miRNA: 3'- aGGUAGGuGAGUAGGGGU--------GGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 37002 | 0.7 | 0.584454 |
Target: 5'- gCCcUCCGCccccCGggcCCCCGCCGCCGCc -3' miRNA: 3'- aGGuAGGUGa---GUa--GGGGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 127782 | 0.7 | 0.594578 |
Target: 5'- gCCcUCCccCUC--CCCCGCCGCCGCGc -3' miRNA: 3'- aGGuAGGu-GAGuaGGGGUGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 86954 | 0.7 | 0.598635 |
Target: 5'- gCCAUCguCUCGgccgccauggaccgCCgCCACCGCCGCu -3' miRNA: 3'- aGGUAGguGAGUa-------------GG-GGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 141901 | 0.7 | 0.604729 |
Target: 5'- cUCCAccUCCACgcg-CCCCGCgGCCGUu -3' miRNA: 3'- -AGGU--AGGUGaguaGGGGUGgUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 1689 | 0.7 | 0.604729 |
Target: 5'- gCCcUCCGCcgCggCCgCCGCCGCCGCu -3' miRNA: 3'- aGGuAGGUGa-GuaGG-GGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 36404 | 0.7 | 0.604729 |
Target: 5'- cCCGggCGCUCGUCCCC-CU-CCGCAg -3' miRNA: 3'- aGGUagGUGAGUAGGGGuGGuGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 24995 | 0.7 | 0.625084 |
Target: 5'- cCCGUCaucgucgucCUCGUCCCCGCUGCUGUc -3' miRNA: 3'- aGGUAGgu-------GAGUAGGGGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 69445 | 0.7 | 0.604729 |
Target: 5'- gCCGUUCGC--GUCCUCGCgCGCCGCGg -3' miRNA: 3'- aGGUAGGUGagUAGGGGUG-GUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 25876 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 26050 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 26085 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 26015 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 37158 | 0.69 | 0.634255 |
Target: 5'- gCCG-CCAC-CGUCUCCGCCggcgcccGCCGCGg -3' miRNA: 3'- aGGUaGGUGaGUAGGGGUGG-------UGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 69503 | 0.69 | 0.635274 |
Target: 5'- cCCGcgCCGC-C-UCCuCCGCCGCCGCGc -3' miRNA: 3'- aGGUa-GGUGaGuAGG-GGUGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 25911 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 25841 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 58554 | 0.69 | 0.645461 |
Target: 5'- gUCGUCUcCUCuUCgCCGCCGCCGCc -3' miRNA: 3'- aGGUAGGuGAGuAGgGGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 26120 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 25980 | 0.69 | 0.686021 |
Target: 5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3' miRNA: 3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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