miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 134501 0.69 0.675926
Target:  5'- cUUCGggCGCUCGUCCCUcaACCuCCGCGg -3'
miRNA:   3'- -AGGUagGUGAGUAGGGG--UGGuGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 32741 0.69 0.675926
Target:  5'- cCCGUCCcCUCuuccuUCCCCACaCGCCccGCu -3'
miRNA:   3'- aGGUAGGuGAGu----AGGGGUG-GUGG--CGu -5'
29492 3' -57.6 NC_006151.1 + 112430 0.69 0.675926
Target:  5'- aCCG-CCGCg---CCgCCGCCGCCGCGc -3'
miRNA:   3'- aGGUaGGUGaguaGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 8916 0.69 0.675926
Target:  5'- cUCC-UCCuCUCcucUCCCCGCCcCCGCc -3'
miRNA:   3'- -AGGuAGGuGAGu--AGGGGUGGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26015 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26050 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26085 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26120 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25980 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25911 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25876 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25806 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 50821 0.69 0.686021
Target:  5'- -gCGUCCACgccUCggCCCgCGCCGCCGUc -3'
miRNA:   3'- agGUAGGUG---AGuaGGG-GUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25771 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 61662 0.69 0.686021
Target:  5'- gCCAgCCGCUCGUggcCCCCGCC-CUGUu -3'
miRNA:   3'- aGGUaGGUGAGUA---GGGGUGGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25841 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 50502 0.68 0.694066
Target:  5'- cCCGUCUACgccaccgUCGUCCagccuacccaccaCCACCACCaGCAg -3'
miRNA:   3'- aGGUAGGUG-------AGUAGG-------------GGUGGUGG-CGU- -5'
29492 3' -57.6 NC_006151.1 + 1312 0.68 0.696072
Target:  5'- cCCAUCUGCUaagaCCCACCACCa-- -3'
miRNA:   3'- aGGUAGGUGAguagGGGUGGUGGcgu -5'
29492 3' -57.6 NC_006151.1 + 41427 0.68 0.696072
Target:  5'- uUCCGUCCccACUCccagccUCCCCcgcuGCCACCGa- -3'
miRNA:   3'- -AGGUAGG--UGAGu-----AGGGG----UGGUGGCgu -5'
29492 3' -57.6 NC_006151.1 + 141577 0.68 0.696072
Target:  5'- cUCCG-CCGCUCcUCCCCccgggcgagaGCCGCCcgGCGa -3'
miRNA:   3'- -AGGUaGGUGAGuAGGGG----------UGGUGG--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.