Results 81 - 100 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29492 | 3' | -57.6 | NC_006151.1 | + | 141577 | 0.68 | 0.696072 |
Target: 5'- cUCCG-CCGCUCcUCCCCccgggcgagaGCCGCCcgGCGa -3' miRNA: 3'- -AGGUaGGUGAGuAGGGG----------UGGUGG--CGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 82977 | 0.68 | 0.696072 |
Target: 5'- cUCCAUgCCGCgCGUCUgcgccgCCACgGCCGCGg -3' miRNA: 3'- -AGGUA-GGUGaGUAGG------GGUGgUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 60236 | 0.68 | 0.705073 |
Target: 5'- gCCGUCCacguacacgaagaGCUCGUCgCgcagcaGCCGCCGCAc -3' miRNA: 3'- aGGUAGG-------------UGAGUAGgGg-----UGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 109654 | 0.68 | 0.706071 |
Target: 5'- gCCG-CCGCUg--CCgCCACCGCCGCc -3' miRNA: 3'- aGGUaGGUGAguaGG-GGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 51795 | 0.68 | 0.706071 |
Target: 5'- cCCGcUCCagGCUCAggCCCUGCgACCGCGc -3' miRNA: 3'- aGGU-AGG--UGAGUa-GGGGUGgUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 65916 | 0.68 | 0.706071 |
Target: 5'- cUCGUCCuCgUCGggcgCCCCGCCGCCGg- -3' miRNA: 3'- aGGUAGGuG-AGUa---GGGGUGGUGGCgu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 59431 | 0.68 | 0.706071 |
Target: 5'- gCCAgcUCgGCgUCggCCgCCGCCGCCGCGa -3' miRNA: 3'- aGGU--AGgUG-AGuaGG-GGUGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 45496 | 0.68 | 0.716007 |
Target: 5'- aUCCGcagcgCCGCUUucagCCCCAggagccgucgacCCACCGCGg -3' miRNA: 3'- -AGGUa----GGUGAGua--GGGGU------------GGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 64163 | 0.68 | 0.716007 |
Target: 5'- cUCC-UUCGCccCGUCCCCGCCcCCGUc -3' miRNA: 3'- -AGGuAGGUGa-GUAGGGGUGGuGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 1465 | 0.68 | 0.716007 |
Target: 5'- cCCAUCCACaagaccaccUCcaCCCCagagACCACCGCc -3' miRNA: 3'- aGGUAGGUG---------AGuaGGGG----UGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 876 | 0.68 | 0.716007 |
Target: 5'- uUCCGcCCGCUC--UCCCACCGCCu-- -3' miRNA: 3'- -AGGUaGGUGAGuaGGGGUGGUGGcgu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 141940 | 0.68 | 0.716007 |
Target: 5'- gUCCAUCCcgguCUCucgCCCCACguCCGg- -3' miRNA: 3'- -AGGUAGGu---GAGua-GGGGUGguGGCgu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 48511 | 0.68 | 0.716007 |
Target: 5'- gCCGUgCACaaggacUCCCUGCCGCCGCu -3' miRNA: 3'- aGGUAgGUGagu---AGGGGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 60663 | 0.68 | 0.716007 |
Target: 5'- -gCGUCCucGCUCccGUCgCCGCCGCCGUc -3' miRNA: 3'- agGUAGG--UGAG--UAGgGGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 101871 | 0.68 | 0.725872 |
Target: 5'- -gCA-CCGCUC--CCgCCGCCGCCGCGg -3' miRNA: 3'- agGUaGGUGAGuaGG-GGUGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 117932 | 0.68 | 0.729796 |
Target: 5'- gUCCGcCCggagaggggaccgagACUCGaCCCCGuCCGCCGCGc -3' miRNA: 3'- -AGGUaGG---------------UGAGUaGGGGU-GGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 84160 | 0.68 | 0.734683 |
Target: 5'- gCCAgcugcgCgACUCGgcgcgccUCCUCGCCGCCGCc -3' miRNA: 3'- aGGUa-----GgUGAGU-------AGGGGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 26482 | 0.68 | 0.735657 |
Target: 5'- cUCGUCCucCUCGUCCUCuCCAUCGUc -3' miRNA: 3'- aGGUAGGu-GAGUAGGGGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 117897 | 0.68 | 0.745353 |
Target: 5'- aCC-UCCGCcucucucuUCA-CCCCGCCGCCGg- -3' miRNA: 3'- aGGuAGGUG--------AGUaGGGGUGGUGGCgu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 4840 | 0.68 | 0.745353 |
Target: 5'- cCCAgagCCcCUCgcgggaGUCCCCggcGCCGCCGUAg -3' miRNA: 3'- aGGUa--GGuGAG------UAGGGG---UGGUGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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