Results 101 - 120 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29492 | 3' | -57.6 | NC_006151.1 | + | 57350 | 0.67 | 0.754951 |
Target: 5'- --aGUCCGCggggCCCUcgcGCCGCCGCAg -3' miRNA: 3'- aggUAGGUGaguaGGGG---UGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 76873 | 0.67 | 0.754951 |
Target: 5'- gCCG-CCGC-CAggagCCCCAgCGCCGCc -3' miRNA: 3'- aGGUaGGUGaGUa---GGGGUgGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 12012 | 0.67 | 0.754951 |
Target: 5'- cCCGUCguCUC--UCCCGCCGgCGCAa -3' miRNA: 3'- aGGUAGguGAGuaGGGGUGGUgGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 107588 | 0.67 | 0.754951 |
Target: 5'- cUCCcgCCGC-CAagcuggCCCCGCCggcGCCGCc -3' miRNA: 3'- -AGGuaGGUGaGUa-----GGGGUGG---UGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 58728 | 0.67 | 0.762552 |
Target: 5'- cCCGUgCCGCUCGcgucgcgcagcgCCgCgGCCACCGCGg -3' miRNA: 3'- aGGUA-GGUGAGUa-----------GG-GgUGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 87426 | 0.67 | 0.764441 |
Target: 5'- cCCAgCCGgUggcCGUgCCCGCCGCCGCc -3' miRNA: 3'- aGGUaGGUgA---GUAgGGGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 131348 | 0.67 | 0.764441 |
Target: 5'- gCCGgcccCCGCUCGUCCUCuccuCCuCCGCc -3' miRNA: 3'- aGGUa---GGUGAGUAGGGGu---GGuGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 112213 | 0.67 | 0.771015 |
Target: 5'- cCCGUgggcgcagucgcgcUCGCUCGUCgCCGCCGCCagGCGc -3' miRNA: 3'- aGGUA--------------GGUGAGUAGgGGUGGUGG--CGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 131187 | 0.67 | 0.773814 |
Target: 5'- cCCAUCC--UCGUCCCCAUCcUCGUc -3' miRNA: 3'- aGGUAGGugAGUAGGGGUGGuGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 99929 | 0.67 | 0.773814 |
Target: 5'- -aCGgcgCCGgcCUCAUCCCCaacgucagcgGCUACCGCAc -3' miRNA: 3'- agGUa--GGU--GAGUAGGGG----------UGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 42650 | 0.67 | 0.773814 |
Target: 5'- gUCUggCCGggCAUCCCCGCCGCgGgGa -3' miRNA: 3'- -AGGuaGGUgaGUAGGGGUGGUGgCgU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 42542 | 0.67 | 0.773814 |
Target: 5'- uUCUAgguuUCC-CUCuUCCCCGCCACCc-- -3' miRNA: 3'- -AGGU----AGGuGAGuAGGGGUGGUGGcgu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 93695 | 0.67 | 0.782144 |
Target: 5'- cCCGcagaaacUCgCACUCgAUCUCCACCGCCucgGCAa -3' miRNA: 3'- aGGU-------AG-GUGAG-UAGGGGUGGUGG---CGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 37206 | 0.67 | 0.783063 |
Target: 5'- cUCC-UCCGcCUCcUCCuCCGCCGCgGCc -3' miRNA: 3'- -AGGuAGGU-GAGuAGG-GGUGGUGgCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 42942 | 0.67 | 0.783063 |
Target: 5'- cUCCccCCAC--AUCCUCGCCAuCCGCGg -3' miRNA: 3'- -AGGuaGGUGagUAGGGGUGGU-GGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 38999 | 0.67 | 0.783063 |
Target: 5'- gCCGcgcgCCGCggcgccCcgCUCCGCCGCCGCGc -3' miRNA: 3'- aGGUa---GGUGa-----GuaGGGGUGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 93203 | 0.67 | 0.783063 |
Target: 5'- cUCCGUCCcCcCGUCCaCC-UCACCGCc -3' miRNA: 3'- -AGGUAGGuGaGUAGG-GGuGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 83761 | 0.67 | 0.788548 |
Target: 5'- gCCAUCgGCUCGggcacguacagcgCCCCGCCGagCGCc -3' miRNA: 3'- aGGUAGgUGAGUa------------GGGGUGGUg-GCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 78995 | 0.67 | 0.792177 |
Target: 5'- cCCGUCCACaaCA-CCCC-CCGCuCGCu -3' miRNA: 3'- aGGUAGGUGa-GUaGGGGuGGUG-GCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 135879 | 0.67 | 0.792177 |
Target: 5'- -gCGUCCGCgugCggCCCguguucguCGCCGCCGCGa -3' miRNA: 3'- agGUAGGUGa--GuaGGG--------GUGGUGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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