miRNA display CGI


Results 81 - 100 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 25806 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25841 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25876 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25911 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 25980 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26015 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26050 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 26085 0.69 0.686021
Target:  5'- cCCAUcCCACUCcccUCuCCCuCCACCGUc -3'
miRNA:   3'- aGGUA-GGUGAGu--AG-GGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 8916 0.69 0.675926
Target:  5'- cUCC-UCCuCUCcucUCCCCGCCcCCGCc -3'
miRNA:   3'- -AGGuAGGuGAGu--AGGGGUGGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 112430 0.69 0.675926
Target:  5'- aCCG-CCGCg---CCgCCGCCGCCGCGc -3'
miRNA:   3'- aGGUaGGUGaguaGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 32741 0.69 0.675926
Target:  5'- cCCGUCCcCUCuuccuUCCCCACaCGCCccGCu -3'
miRNA:   3'- aGGUAGGuGAGu----AGGGGUG-GUGG--CGu -5'
29492 3' -57.6 NC_006151.1 + 134501 0.69 0.675926
Target:  5'- cUUCGggCGCUCGUCCCUcaACCuCCGCGg -3'
miRNA:   3'- -AGGUagGUGAGUAGGGG--UGGuGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 79753 0.69 0.655637
Target:  5'- aUCCAggcCCGCggGUCCCCGguCCACgGCGg -3'
miRNA:   3'- -AGGUa--GGUGagUAGGGGU--GGUGgCGU- -5'
29492 3' -57.6 NC_006151.1 + 85597 0.69 0.655637
Target:  5'- uUCCAgcucggCgCGCUCGUgCCCaacgcgccGCCGCCGCGc -3'
miRNA:   3'- -AGGUa-----G-GUGAGUAgGGG--------UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 32238 0.69 0.655637
Target:  5'- cUCCuggCCGCggCGaCCgCCGCCGCCGCu -3'
miRNA:   3'- -AGGua-GGUGa-GUaGG-GGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 109429 0.69 0.645461
Target:  5'- aCCA-CCGC-CggCCCCACCACCuucGCGg -3'
miRNA:   3'- aGGUaGGUGaGuaGGGGUGGUGG---CGU- -5'
29492 3' -57.6 NC_006151.1 + 13040 0.69 0.645461
Target:  5'- cCCGgcggUgACcCAUCCCCACCccGCCGCGc -3'
miRNA:   3'- aGGUa---GgUGaGUAGGGGUGG--UGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 36782 0.69 0.645461
Target:  5'- cCCAacUCCaACUCcaacUCCaCCACCACCGUc -3'
miRNA:   3'- aGGU--AGG-UGAGu---AGG-GGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 40387 0.69 0.645461
Target:  5'- cCCGUCCucCUCcUCCUCugCGuCCGCGg -3'
miRNA:   3'- aGGUAGGu-GAGuAGGGGugGU-GGCGU- -5'
29492 3' -57.6 NC_006151.1 + 109393 0.69 0.645461
Target:  5'- aCCA-CCGC-CggCCCCACCACCuucGCGg -3'
miRNA:   3'- aGGUaGGUGaGuaGGGGUGGUGG---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.