miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 43059 0.77 0.263994
Target:  5'- gCCGUcgCCAC-CAUCgCCACCGCCGCGu -3'
miRNA:   3'- aGGUA--GGUGaGUAGgGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 43176 0.67 0.792177
Target:  5'- cCCAacCCAaucUUCGcCCCCACCGCCuGCAc -3'
miRNA:   3'- aGGUa-GGU---GAGUaGGGGUGGUGG-CGU- -5'
29492 3' -57.6 NC_006151.1 + 43497 1.09 0.00198
Target:  5'- aUCCAUCCACUCAUCCCCACCACCGCAc -3'
miRNA:   3'- -AGGUAGGUGAGUAGGGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 43993 0.66 0.843566
Target:  5'- cCCAcCCACcCAcCCCC-CC-CCGCAg -3'
miRNA:   3'- aGGUaGGUGaGUaGGGGuGGuGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 45496 0.68 0.716007
Target:  5'- aUCCGcagcgCCGCUUucagCCCCAggagccgucgacCCACCGCGg -3'
miRNA:   3'- -AGGUa----GGUGAGua--GGGGU------------GGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 47070 0.66 0.818626
Target:  5'- uUCCcgGUCCuGCUCcggcUCCCgGCC-CCGCAc -3'
miRNA:   3'- -AGG--UAGG-UGAGu---AGGGgUGGuGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 48511 0.68 0.716007
Target:  5'- gCCGUgCACaaggacUCCCUGCCGCCGCu -3'
miRNA:   3'- aGGUAgGUGagu---AGGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 50502 0.68 0.694066
Target:  5'- cCCGUCUACgccaccgUCGUCCagccuacccaccaCCACCACCaGCAg -3'
miRNA:   3'- aGGUAGGUG-------AGUAGG-------------GGUGGUGG-CGU- -5'
29492 3' -57.6 NC_006151.1 + 50666 0.66 0.827118
Target:  5'- gUCGUgCGCggccgCAcCCCCgcGCCGCCGCGg -3'
miRNA:   3'- aGGUAgGUGa----GUaGGGG--UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 50821 0.69 0.686021
Target:  5'- -gCGUCCACgccUCggCCCgCGCCGCCGUc -3'
miRNA:   3'- agGUAGGUG---AGuaGGG-GUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 51081 0.66 0.827118
Target:  5'- cUCC-UCCGCUCGcccgCCCCucuCCGCCu-- -3'
miRNA:   3'- -AGGuAGGUGAGUa---GGGGu--GGUGGcgu -5'
29492 3' -57.6 NC_006151.1 + 51795 0.68 0.706071
Target:  5'- cCCGcUCCagGCUCAggCCCUGCgACCGCGc -3'
miRNA:   3'- aGGU-AGG--UGAGUa-GGGGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 55722 0.78 0.212494
Target:  5'- cUCCAUCuCGCUCAUCCUCG-CGCCGUAc -3'
miRNA:   3'- -AGGUAG-GUGAGUAGGGGUgGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 57350 0.67 0.754951
Target:  5'- --aGUCCGCggggCCCUcgcGCCGCCGCAg -3'
miRNA:   3'- aggUAGGUGaguaGGGG---UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 58554 0.69 0.645461
Target:  5'- gUCGUCUcCUCuUCgCCGCCGCCGCc -3'
miRNA:   3'- aGGUAGGuGAGuAGgGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 58728 0.67 0.762552
Target:  5'- cCCGUgCCGCUCGcgucgcgcagcgCCgCgGCCACCGCGg -3'
miRNA:   3'- aGGUA-GGUGAGUa-----------GG-GgUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 59431 0.68 0.706071
Target:  5'- gCCAgcUCgGCgUCggCCgCCGCCGCCGCGa -3'
miRNA:   3'- aGGU--AGgUG-AGuaGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 60236 0.68 0.705073
Target:  5'- gCCGUCCacguacacgaagaGCUCGUCgCgcagcaGCCGCCGCAc -3'
miRNA:   3'- aGGUAGG-------------UGAGUAGgGg-----UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 60608 0.73 0.413386
Target:  5'- cUCCA-CCGCcgUCGUCgCCGCCGCCGUc -3'
miRNA:   3'- -AGGUaGGUG--AGUAGgGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 60663 0.68 0.716007
Target:  5'- -gCGUCCucGCUCccGUCgCCGCCGCCGUc -3'
miRNA:   3'- agGUAGG--UGAG--UAGgGGUGGUGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.