miRNA display CGI


Results 81 - 100 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 61420 0.77 0.245783
Target:  5'- gCCGUCCucCUCggCCCCGCCGCgGCGc -3'
miRNA:   3'- aGGUAGGu-GAGuaGGGGUGGUGgCGU- -5'
29492 3' -57.6 NC_006151.1 + 61662 0.69 0.686021
Target:  5'- gCCAgCCGCUCGUggcCCCCGCC-CUGUu -3'
miRNA:   3'- aGGUaGGUGAGUA---GGGGUGGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 62696 0.7 0.625084
Target:  5'- cCUGUCC-CUUGUCCCCGgucccgccCCGCCGCc -3'
miRNA:   3'- aGGUAGGuGAGUAGGGGU--------GGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 64163 0.68 0.716007
Target:  5'- cUCC-UUCGCccCGUCCCCGCCcCCGUc -3'
miRNA:   3'- -AGGuAGGUGa-GUAGGGGUGGuGGCGu -5'
29492 3' -57.6 NC_006151.1 + 65759 0.7 0.625084
Target:  5'- cUCGUCC-C-CGUCCCCGUCGCCGCc -3'
miRNA:   3'- aGGUAGGuGaGUAGGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 65916 0.68 0.706071
Target:  5'- cUCGUCCuCgUCGggcgCCCCGCCGCCGg- -3'
miRNA:   3'- aGGUAGGuG-AGUa---GGGGUGGUGGCgu -5'
29492 3' -57.6 NC_006151.1 + 68416 0.66 0.827118
Target:  5'- gCCcgCCcccCUCG-CCCCGCUACaCGCGg -3'
miRNA:   3'- aGGuaGGu--GAGUaGGGGUGGUG-GCGU- -5'
29492 3' -57.6 NC_006151.1 + 69445 0.7 0.604729
Target:  5'- gCCGUUCGC--GUCCUCGCgCGCCGCGg -3'
miRNA:   3'- aGGUAGGUGagUAGGGGUG-GUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 69503 0.69 0.635274
Target:  5'- cCCGcgCCGC-C-UCCuCCGCCGCCGCGc -3'
miRNA:   3'- aGGUa-GGUGaGuAGG-GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 71457 0.67 0.801147
Target:  5'- cUCC-UCCcucGCUCcgCCUCGCCACCcCGg -3'
miRNA:   3'- -AGGuAGG---UGAGuaGGGGUGGUGGcGU- -5'
29492 3' -57.6 NC_006151.1 + 71589 0.71 0.564315
Target:  5'- cUCCGcgggcgCCGCgUCGUCacaccUCCACCACCGCGg -3'
miRNA:   3'- -AGGUa-----GGUG-AGUAG-----GGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 72337 0.66 0.835433
Target:  5'- gCCAUggCCGCgagCA-CgUCGCCGCCGCAg -3'
miRNA:   3'- aGGUA--GGUGa--GUaGgGGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 76873 0.67 0.754951
Target:  5'- gCCG-CCGC-CAggagCCCCAgCGCCGCc -3'
miRNA:   3'- aGGUaGGUGaGUa---GGGGUgGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 77193 0.75 0.340121
Target:  5'- gUCCGccgCCGCguccucCAUCCCCgcGCCGCCGCGu -3'
miRNA:   3'- -AGGUa--GGUGa-----GUAGGGG--UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 78995 0.67 0.792177
Target:  5'- cCCGUCCACaaCA-CCCC-CCGCuCGCu -3'
miRNA:   3'- aGGUAGGUGa-GUaGGGGuGGUG-GCGu -5'
29492 3' -57.6 NC_006151.1 + 79753 0.69 0.655637
Target:  5'- aUCCAggcCCGCggGUCCCCGguCCACgGCGg -3'
miRNA:   3'- -AGGUa--GGUGagUAGGGGU--GGUGgCGU- -5'
29492 3' -57.6 NC_006151.1 + 81329 0.76 0.317881
Target:  5'- cUCCGcCCcCUCGUCCgucgCCGCCGCCGCGc -3'
miRNA:   3'- -AGGUaGGuGAGUAGG----GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 82977 0.68 0.696072
Target:  5'- cUCCAUgCCGCgCGUCUgcgccgCCACgGCCGCGg -3'
miRNA:   3'- -AGGUA-GGUGaGUAGG------GGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 83344 0.66 0.827118
Target:  5'- -gCGUCCACgugC-UCCCCGgCGCgCGCGc -3'
miRNA:   3'- agGUAGGUGa--GuAGGGGUgGUG-GCGU- -5'
29492 3' -57.6 NC_006151.1 + 83761 0.67 0.788548
Target:  5'- gCCAUCgGCUCGggcacguacagcgCCCCGCCGagCGCc -3'
miRNA:   3'- aGGUAGgUGAGUa------------GGGGUGGUg-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.