miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29492 3' -57.6 NC_006151.1 + 93992 0.66 0.838709
Target:  5'- cUCCA-CCuugcggcggauggcCUCGUCCCgCAgCGCCGCGc -3'
miRNA:   3'- -AGGUaGGu-------------GAGUAGGG-GUgGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 93695 0.67 0.782144
Target:  5'- cCCGcagaaacUCgCACUCgAUCUCCACCGCCucgGCAa -3'
miRNA:   3'- aGGU-------AG-GUGAG-UAGGGGUGGUGG---CGU- -5'
29492 3' -57.6 NC_006151.1 + 93203 0.67 0.783063
Target:  5'- cUCCGUCCcCcCGUCCaCC-UCACCGCc -3'
miRNA:   3'- -AGGUAGGuGaGUAGG-GGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 93159 0.72 0.486087
Target:  5'- gCCGUCCccccGC-CGUCCCC-CCGCCGUc -3'
miRNA:   3'- aGGUAGG----UGaGUAGGGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 93126 0.72 0.486087
Target:  5'- gCCGUCCccccGC-CGUCCCC-CCGCCGUc -3'
miRNA:   3'- aGGUAGG----UGaGUAGGGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 93093 0.72 0.486087
Target:  5'- gCCGUCCccccGC-CGUCCCC-CCGCCGUc -3'
miRNA:   3'- aGGUAGG----UGaGUAGGGGuGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 90079 0.66 0.809967
Target:  5'- -aCGUUCACgagggcCCCCGCCgcGCCGCAg -3'
miRNA:   3'- agGUAGGUGagua--GGGGUGG--UGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 87426 0.67 0.764441
Target:  5'- cCCAgCCGgUggcCGUgCCCGCCGCCGCc -3'
miRNA:   3'- aGGUaGGUgA---GUAgGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 87371 0.72 0.50521
Target:  5'- cCCGUCgCGCaCGUCCCCGCCcagguggucCCGCAg -3'
miRNA:   3'- aGGUAG-GUGaGUAGGGGUGGu--------GGCGU- -5'
29492 3' -57.6 NC_006151.1 + 86954 0.7 0.598635
Target:  5'- gCCAUCguCUCGgccgccauggaccgCCgCCACCGCCGCu -3'
miRNA:   3'- aGGUAGguGAGUa-------------GG-GGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 85597 0.69 0.655637
Target:  5'- uUCCAgcucggCgCGCUCGUgCCCaacgcgccGCCGCCGCGc -3'
miRNA:   3'- -AGGUa-----G-GUGAGUAgGGG--------UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 84160 0.68 0.734683
Target:  5'- gCCAgcugcgCgACUCGgcgcgccUCCUCGCCGCCGCc -3'
miRNA:   3'- aGGUa-----GgUGAGU-------AGGGGUGGUGGCGu -5'
29492 3' -57.6 NC_006151.1 + 83761 0.67 0.788548
Target:  5'- gCCAUCgGCUCGggcacguacagcgCCCCGCCGagCGCc -3'
miRNA:   3'- aGGUAGgUGAGUa------------GGGGUGGUg-GCGu -5'
29492 3' -57.6 NC_006151.1 + 83344 0.66 0.827118
Target:  5'- -gCGUCCACgugC-UCCCCGgCGCgCGCGc -3'
miRNA:   3'- agGUAGGUGa--GuAGGGGUgGUG-GCGU- -5'
29492 3' -57.6 NC_006151.1 + 82977 0.68 0.696072
Target:  5'- cUCCAUgCCGCgCGUCUgcgccgCCACgGCCGCGg -3'
miRNA:   3'- -AGGUA-GGUGaGUAGG------GGUGgUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 81329 0.76 0.317881
Target:  5'- cUCCGcCCcCUCGUCCgucgCCGCCGCCGCGc -3'
miRNA:   3'- -AGGUaGGuGAGUAGG----GGUGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 79753 0.69 0.655637
Target:  5'- aUCCAggcCCGCggGUCCCCGguCCACgGCGg -3'
miRNA:   3'- -AGGUa--GGUGagUAGGGGU--GGUGgCGU- -5'
29492 3' -57.6 NC_006151.1 + 78995 0.67 0.792177
Target:  5'- cCCGUCCACaaCA-CCCC-CCGCuCGCu -3'
miRNA:   3'- aGGUAGGUGa-GUaGGGGuGGUG-GCGu -5'
29492 3' -57.6 NC_006151.1 + 77193 0.75 0.340121
Target:  5'- gUCCGccgCCGCguccucCAUCCCCgcGCCGCCGCGu -3'
miRNA:   3'- -AGGUa--GGUGa-----GUAGGGG--UGGUGGCGU- -5'
29492 3' -57.6 NC_006151.1 + 76873 0.67 0.754951
Target:  5'- gCCG-CCGC-CAggagCCCCAgCGCCGCc -3'
miRNA:   3'- aGGUaGGUGaGUa---GGGGUgGUGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.