Results 81 - 100 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29492 | 3' | -57.6 | NC_006151.1 | + | 51795 | 0.68 | 0.706071 |
Target: 5'- cCCGcUCCagGCUCAggCCCUGCgACCGCGc -3' miRNA: 3'- aGGU-AGG--UGAGUa-GGGGUGgUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 51081 | 0.66 | 0.827118 |
Target: 5'- cUCC-UCCGCUCGcccgCCCCucuCCGCCu-- -3' miRNA: 3'- -AGGuAGGUGAGUa---GGGGu--GGUGGcgu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 50821 | 0.69 | 0.686021 |
Target: 5'- -gCGUCCACgccUCggCCCgCGCCGCCGUc -3' miRNA: 3'- agGUAGGUG---AGuaGGG-GUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 50666 | 0.66 | 0.827118 |
Target: 5'- gUCGUgCGCggccgCAcCCCCgcGCCGCCGCGg -3' miRNA: 3'- aGGUAgGUGa----GUaGGGG--UGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 50502 | 0.68 | 0.694066 |
Target: 5'- cCCGUCUACgccaccgUCGUCCagccuacccaccaCCACCACCaGCAg -3' miRNA: 3'- aGGUAGGUG-------AGUAGG-------------GGUGGUGG-CGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 48511 | 0.68 | 0.716007 |
Target: 5'- gCCGUgCACaaggacUCCCUGCCGCCGCu -3' miRNA: 3'- aGGUAgGUGagu---AGGGGUGGUGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 47070 | 0.66 | 0.818626 |
Target: 5'- uUCCcgGUCCuGCUCcggcUCCCgGCC-CCGCAc -3' miRNA: 3'- -AGG--UAGG-UGAGu---AGGGgUGGuGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 45496 | 0.68 | 0.716007 |
Target: 5'- aUCCGcagcgCCGCUUucagCCCCAggagccgucgacCCACCGCGg -3' miRNA: 3'- -AGGUa----GGUGAGua--GGGGU------------GGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 43993 | 0.66 | 0.843566 |
Target: 5'- cCCAcCCACcCAcCCCC-CC-CCGCAg -3' miRNA: 3'- aGGUaGGUGaGUaGGGGuGGuGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 43497 | 1.09 | 0.00198 |
Target: 5'- aUCCAUCCACUCAUCCCCACCACCGCAc -3' miRNA: 3'- -AGGUAGGUGAGUAGGGGUGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 43176 | 0.67 | 0.792177 |
Target: 5'- cCCAacCCAaucUUCGcCCCCACCGCCuGCAc -3' miRNA: 3'- aGGUa-GGU---GAGUaGGGGUGGUGG-CGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 43059 | 0.77 | 0.263994 |
Target: 5'- gCCGUcgCCAC-CAUCgCCACCGCCGCGu -3' miRNA: 3'- aGGUA--GGUGaGUAGgGGUGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 42942 | 0.67 | 0.783063 |
Target: 5'- cUCCccCCAC--AUCCUCGCCAuCCGCGg -3' miRNA: 3'- -AGGuaGGUGagUAGGGGUGGU-GGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 42650 | 0.67 | 0.773814 |
Target: 5'- gUCUggCCGggCAUCCCCGCCGCgGgGa -3' miRNA: 3'- -AGGuaGGUgaGUAGGGGUGGUGgCgU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 42542 | 0.67 | 0.773814 |
Target: 5'- uUCUAgguuUCC-CUCuUCCCCGCCACCc-- -3' miRNA: 3'- -AGGU----AGGuGAGuAGGGGUGGUGGcgu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 41427 | 0.68 | 0.696072 |
Target: 5'- uUCCGUCCccACUCccagccUCCCCcgcuGCCACCGa- -3' miRNA: 3'- -AGGUAGG--UGAGu-----AGGGG----UGGUGGCgu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 40387 | 0.69 | 0.645461 |
Target: 5'- cCCGUCCucCUCcUCCUCugCGuCCGCGg -3' miRNA: 3'- aGGUAGGu-GAGuAGGGGugGU-GGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 39976 | 0.66 | 0.835433 |
Target: 5'- gCCG-CCGCgggCG-CCCCGCCgGCCGUg -3' miRNA: 3'- aGGUaGGUGa--GUaGGGGUGG-UGGCGu -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 38999 | 0.67 | 0.783063 |
Target: 5'- gCCGcgcgCCGCggcgccCcgCUCCGCCGCCGCGc -3' miRNA: 3'- aGGUa---GGUGa-----GuaGGGGUGGUGGCGU- -5' |
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29492 | 3' | -57.6 | NC_006151.1 | + | 38510 | 0.67 | 0.792177 |
Target: 5'- cUCCGgcuacgCCAgCUC--CCCCGCCGCCGg- -3' miRNA: 3'- -AGGUa-----GGU-GAGuaGGGGUGGUGGCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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