miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 3' -58.5 NC_006151.1 + 26206 0.68 0.70825
Target:  5'- gAGAGAGuuGAGGUucgaGCGGcGGGccgccguguuuauugAGGGCa -3'
miRNA:   3'- -UCUCUCuuCUCUA----CGCC-CCC---------------UCCCGc -5'
29494 3' -58.5 NC_006151.1 + 12388 0.69 0.613724
Target:  5'- aGGAGAGAGcGAGA-GCGGGaacuGGAGaGGgGg -3'
miRNA:   3'- -UCUCUCUU-CUCUaCGCCC----CCUC-CCgC- -5'
29494 3' -58.5 NC_006151.1 + 30414 0.69 0.613724
Target:  5'- gGGAGAGGaaGGAGggGaGGacGGAGGGCGa -3'
miRNA:   3'- -UCUCUCU--UCUCuaCgCCc-CCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 44368 0.69 0.611703
Target:  5'- gGGGGAGAGGGuugcgacggucccGccGCGGGGGcgccgaggagggaGGGGCGc -3'
miRNA:   3'- -UCUCUCUUCU-------------CuaCGCCCCC-------------UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16656 0.69 0.603625
Target:  5'- gGGGGAGuccGGGGGAgucCGGGGGAGuccucGGCGg -3'
miRNA:   3'- -UCUCUC---UUCUCUac-GCCCCCUC-----CCGC- -5'
29494 3' -58.5 NC_006151.1 + 66901 0.69 0.601608
Target:  5'- cGGAGGacgccgccGAGGAGGgccacgauggagGCGGGGGcgAGGGCa -3'
miRNA:   3'- -UCUCU--------CUUCUCUa-----------CGCCCCC--UCCCGc -5'
29494 3' -58.5 NC_006151.1 + 44468 0.69 0.623836
Target:  5'- uGGGGGguGAGGgugGaCGGGGG-GGGUGg -3'
miRNA:   3'- uCUCUCuuCUCUa--C-GCCCCCuCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 5826 0.69 0.633954
Target:  5'- gAGAGccGGAGGAGGagGCcGGGGAGGcuGCGg -3'
miRNA:   3'- -UCUC--UCUUCUCUa-CGcCCCCUCC--CGC- -5'
29494 3' -58.5 NC_006151.1 + 31415 0.69 0.633954
Target:  5'- -aGGGGAAGGGGaagGgGGGGGAcgGGGUGc -3'
miRNA:   3'- ucUCUCUUCUCUa--CgCCCCCU--CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 32 0.69 0.633954
Target:  5'- aAGGGGGcGGGGcuuaaaGGGGGGGGGCu -3'
miRNA:   3'- -UCUCUCuUCUCuacg--CCCCCUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 8559 0.69 0.633954
Target:  5'- nGAGAG-AGAGcGUGCGuGuGGGuGGGUGg -3'
miRNA:   3'- uCUCUCuUCUC-UACGC-C-CCCuCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 8210 0.69 0.638001
Target:  5'- gGGAGAcGAAGAGG-GCcggguccccuucccgGcGGGGAGGGCc -3'
miRNA:   3'- -UCUCU-CUUCUCUaCG---------------C-CCCCUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 26256 0.69 0.64407
Target:  5'- cAGAGGGGAGGGGga-GaGGGGcaaacgauGGGGCGg -3'
miRNA:   3'- -UCUCUCUUCUCUacgC-CCCC--------UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 79291 0.69 0.64407
Target:  5'- cGGAGAGGAGAGucccGCGccccGGGAcGGGCc -3'
miRNA:   3'- -UCUCUCUUCUCua--CGCc---CCCU-CCCGc -5'
29494 3' -58.5 NC_006151.1 + 12322 0.7 0.543703
Target:  5'- aGGAGAGAuGGAugGAUGgauUGGGGGAaggagGGGCGg -3'
miRNA:   3'- -UCUCUCU-UCU--CUAC---GCCCCCU-----CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 30254 0.7 0.552589
Target:  5'- gGGAGAGAcgacgggcgccacAGAcaGcgGCgcgGGGGGAGGGUGu -3'
miRNA:   3'- -UCUCUCU-------------UCU--CuaCG---CCCCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 49532 0.7 0.553579
Target:  5'- aGGAGGGggGAGGgggGUGGGauggacGGAGGagaGCGg -3'
miRNA:   3'- -UCUCUCuuCUCUa--CGCCC------CCUCC---CGC- -5'
29494 3' -58.5 NC_006151.1 + 42113 0.7 0.563507
Target:  5'- cAGGGGGAGGGGuuaugcaaaugcAUGCaaaugaGGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCUUCUC------------UACG------CCCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 110370 0.7 0.563507
Target:  5'- uGGAGGuGggGAGAU-CGGGGGgaauuGGGGgGa -3'
miRNA:   3'- -UCUCU-CuuCUCUAcGCCCCC-----UCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 44842 0.7 0.543703
Target:  5'- cGGGGcGAGcGGGGUcGUGGaGGGGGGGCGc -3'
miRNA:   3'- -UCUCuCUU-CUCUA-CGCC-CCCUCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.