miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 3' -58.5 NC_006151.1 + 110370 0.7 0.563507
Target:  5'- uGGAGGuGggGAGAU-CGGGGGgaauuGGGGgGa -3'
miRNA:   3'- -UCUCU-CuuCUCUAcGCCCCC-----UCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 27508 0.7 0.573482
Target:  5'- gGGuGGGAGGGGGUGCGauGG-GGGCGu -3'
miRNA:   3'- -UCuCUCUUCUCUACGCccCCuCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 43709 0.71 0.476488
Target:  5'- gGGAGAGGaaccgaaaaaucGGGGAcgguggggGCGGGGGAgacGGGCa -3'
miRNA:   3'- -UCUCUCU------------UCUCUa-------CGCCCCCU---CCCGc -5'
29494 3' -58.5 NC_006151.1 + 33079 0.71 0.476488
Target:  5'- cGGAGGGGGcGAGGgcggGCGGuGGAGGGgGg -3'
miRNA:   3'- -UCUCUCUU-CUCUa---CGCCcCCUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 26296 0.71 0.480223
Target:  5'- uGGGGuGGggGGGGUG-GGGGGAggaaagaacagcgcgGGGCGa -3'
miRNA:   3'- -UCUC-UCuuCUCUACgCCCCCU---------------CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 89167 0.71 0.485852
Target:  5'- cGGGcGAGGcGGgcGCGGGGGucgGGGGCGg -3'
miRNA:   3'- uCUCuCUUC-UCuaCGCCCCC---UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 8532 0.71 0.485852
Target:  5'- cGGGGAGAGuGuGAUGUGGGGGGuGuGCGa -3'
miRNA:   3'- -UCUCUCUU-CuCUACGCCCCCUcC-CGC- -5'
29494 3' -58.5 NC_006151.1 + 27302 0.71 0.495303
Target:  5'- uGGGGGGcguGGGGGUcgagGCGGGGGAcGGGgGg -3'
miRNA:   3'- -UCUCUCu--UCUCUA----CGCCCCCU-CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 32092 0.71 0.495303
Target:  5'- -cAGAGAGGGGAcGCGGGGaagagacgcggaGAGGGgGa -3'
miRNA:   3'- ucUCUCUUCUCUaCGCCCC------------CUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 41305 0.71 0.514447
Target:  5'- cGuGAGggGGGG---GGGGGGGGGUGg -3'
miRNA:   3'- uCuCUCuuCUCUacgCCCCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 30156 0.72 0.42232
Target:  5'- uGGGA-AAGAGA-GCGcGGGAGGGCGg -3'
miRNA:   3'- uCUCUcUUCUCUaCGCcCCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 121553 0.72 0.448953
Target:  5'- aGGGGAgGAGGAGggGaaGGGGAcGGGCGc -3'
miRNA:   3'- -UCUCU-CUUCUCuaCgcCCCCU-CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 14495 0.72 0.458036
Target:  5'- gGGGGucGGGAGGGAU-CGGGGGAaGGGgGg -3'
miRNA:   3'- -UCUC--UCUUCUCUAcGCCCCCU-CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 9627 0.72 0.458036
Target:  5'- cGGcGAGggGGGAaGCGGgaGGGAGaGGCGc -3'
miRNA:   3'- -UCuCUCuuCUCUaCGCC--CCCUC-CCGC- -5'
29494 3' -58.5 NC_006151.1 + 27816 0.73 0.405101
Target:  5'- cGGGGGAGGGGAg--GGGGGAGGaGCc -3'
miRNA:   3'- uCUCUCUUCUCUacgCCCCCUCC-CGc -5'
29494 3' -58.5 NC_006151.1 + 16488 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16453 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16418 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16383 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16348 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.