Results 101 - 120 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29494 | 3' | -58.5 | NC_006151.1 | + | 9503 | 0.67 | 0.752912 |
Target: 5'- gGGAGAGcGGGGcGUGUGGGGaaggaaGAGGGg- -3' miRNA: 3'- -UCUCUCuUCUC-UACGCCCC------CUCCCgc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 135085 | 0.67 | 0.752912 |
Target: 5'- --cGGGcGGGGGcgGCGGGGccGGGCGg -3' miRNA: 3'- ucuCUC-UUCUCuaCGCCCCcuCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 10093 | 0.67 | 0.752912 |
Target: 5'- cGGAG-GAAGgcGGGUGCGGaGGAGGaaGCGc -3' miRNA: 3'- -UCUCuCUUC--UCUACGCCcCCUCC--CGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 27380 | 0.67 | 0.762359 |
Target: 5'- cGAcGGgcGAGAacgGC-GGGGAGGGCa -3' miRNA: 3'- uCUcUCuuCUCUa--CGcCCCCUCCCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 1621 | 0.67 | 0.74336 |
Target: 5'- aGGAgGAGAAGGGGacCGGGGGAccGCGg -3' miRNA: 3'- -UCU-CUCUUCUCUacGCCCCCUccCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 15796 | 0.67 | 0.762359 |
Target: 5'- cGAG-GAAGGGGagGaCGGGGGGGaagacGGCGa -3' miRNA: 3'- uCUCuCUUCUCUa-C-GCCCCCUC-----CCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 137598 | 0.67 | 0.733713 |
Target: 5'- -cGGGGucGGGAU-CGGGGGcgcGGGCGg -3' miRNA: 3'- ucUCUCuuCUCUAcGCCCCCu--CCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 16108 | 0.67 | 0.714169 |
Target: 5'- uGGGGAaGGGAGAUGgGGGuGGAGacGGUGn -3' miRNA: 3'- -UCUCUcUUCUCUACgCCC-CCUC--CCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 43893 | 0.67 | 0.714169 |
Target: 5'- cGAGucggcgcGGAGAGggGUaGGGGAGGGgGg -3' miRNA: 3'- uCUCu------CUUCUCuaCGcCCCCUCCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 142546 | 0.67 | 0.714169 |
Target: 5'- aGGGGGGAAcGAGGggGUugGGGGGAaGGCGc -3' miRNA: 3'- -UCUCUCUU-CUCUa-CG--CCCCCUcCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 1933 | 0.67 | 0.714169 |
Target: 5'- cGAGGGGAGAGAaGaCGGaGGaGaAGGGCc -3' miRNA: 3'- uCUCUCUUCUCUaC-GCC-CC-C-UCCCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 131717 | 0.67 | 0.72398 |
Target: 5'- cGGGGGAuGAGGUgguagGCGGGGuGGcGGGCc -3' miRNA: 3'- uCUCUCUuCUCUA-----CGCCCC-CU-CCCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 30844 | 0.67 | 0.724957 |
Target: 5'- cGGAGAGGAGcgaGGAggacuggcggcggcgGCGGaGGAGGGgGg -3' miRNA: 3'- -UCUCUCUUC---UCUa--------------CGCCcCCUCCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 45595 | 0.67 | 0.733713 |
Target: 5'- aGGGGGcGggGGGAgccccgacgggGCGGGcGGAaggGGGCGu -3' miRNA: 3'- -UCUCU-CuuCUCUa----------CGCCC-CCU---CCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 66838 | 0.66 | 0.78999 |
Target: 5'- gGGGGGGAAGAGGagaagGaCGaGaGGGccGGGGCGg -3' miRNA: 3'- -UCUCUCUUCUCUa----C-GC-C-CCC--UCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 42342 | 0.66 | 0.78999 |
Target: 5'- cGGGAGuGGAGcgGa-GGGGAGGGg- -3' miRNA: 3'- uCUCUCuUCUCuaCgcCCCCUCCCgc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 142470 | 0.66 | 0.780908 |
Target: 5'- gGGGGAacGAGGGGGU-UGGGGGAaaGGGgGg -3' miRNA: 3'- -UCUCU--CUUCUCUAcGCCCCCU--CCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 142418 | 0.66 | 0.780908 |
Target: 5'- gGGGGAacGAGGGGGU-UGGGGGAaaGGGgGg -3' miRNA: 3'- -UCUCU--CUUCUCUAcGCCCCCU--CCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 142366 | 0.66 | 0.780908 |
Target: 5'- gGGGGAacGAGGGGGU-UGGGGGAaaGGGgGg -3' miRNA: 3'- -UCUCU--CUUCUCUAcGCCCCCU--CCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 8469 | 0.66 | 0.775395 |
Target: 5'- cGGGAGGAcGGAUggucggucggacgggGCGggcGGGGAGGGUGu -3' miRNA: 3'- uCUCUCUUcUCUA---------------CGC---CCCCUCCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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