Results 121 - 128 of 128 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 29494 | 3' | -58.5 | NC_006151.1 | + | 29613 | 0.66 | 0.789088 |
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Target: 5'- cGGGGGcugguguGGGAGGaGUGGGGGAauuggGGGUGg -3' miRNA: 3'- uCUCUC-------UUCUCUaCGCCCCCU-----CCCGC- -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 8603 | 0.66 | 0.80773 |
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Target: 5'- cGAGuauGggGGccGGUGCGGGuGuGAGGGUc -3' miRNA: 3'- uCUCu--CuuCU--CUACGCCC-C-CUCCCGc -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 133613 | 0.66 | 0.780908 |
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Target: 5'- cGAGGGGcgucuGGGGGUcGCGGcGGccGGGGCGg -3' miRNA: 3'- uCUCUCU-----UCUCUA-CGCCcCC--UCCCGC- -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 142470 | 0.66 | 0.780908 |
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Target: 5'- gGGGGAacGAGGGGGU-UGGGGGAaaGGGgGg -3' miRNA: 3'- -UCUCU--CUUCUCUAcGCCCCCU--CCCgC- -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 142418 | 0.66 | 0.780908 |
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Target: 5'- gGGGGAacGAGGGGGU-UGGGGGAaaGGGgGg -3' miRNA: 3'- -UCUCU--CUUCUCUAcGCCCCCU--CCCgC- -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 142366 | 0.66 | 0.780908 |
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Target: 5'- gGGGGAacGAGGGGGU-UGGGGGAaaGGGgGg -3' miRNA: 3'- -UCUCU--CUUCUCUAcGCCCCCU--CCCgC- -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 8469 | 0.66 | 0.775395 |
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Target: 5'- cGGGAGGAcGGAUggucggucggacgggGCGggcGGGGAGGGUGu -3' miRNA: 3'- uCUCUCUUcUCUA---------------CGC---CCCCUCCCGC- -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 43246 | 0.66 | 0.788185 |
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Target: 5'- cGGGGAGugcgugcggguguGGGGUGCucucgcucugcuuugGGGGGGGGGUc -3' miRNA: 3'- -UCUCUCuu-----------CUCUACG---------------CCCCCUCCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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