Results 61 - 80 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29494 | 3' | -58.5 | NC_006151.1 | + | 26296 | 0.71 | 0.480223 |
Target: 5'- uGGGGuGGggGGGGUG-GGGGGAggaaagaacagcgcgGGGCGa -3' miRNA: 3'- -UCUC-UCuuCUCUACgCCCCCU---------------CCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 8532 | 0.71 | 0.485852 |
Target: 5'- cGGGGAGAGuGuGAUGUGGGGGGuGuGCGa -3' miRNA: 3'- -UCUCUCUU-CuCUACGCCCCCUcC-CGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 89167 | 0.71 | 0.485852 |
Target: 5'- cGGGcGAGGcGGgcGCGGGGGucgGGGGCGg -3' miRNA: 3'- uCUCuCUUC-UCuaCGCCCCC---UCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 27302 | 0.71 | 0.495303 |
Target: 5'- uGGGGGGcguGGGGGUcgagGCGGGGGAcGGGgGg -3' miRNA: 3'- -UCUCUCu--UCUCUA----CGCCCCCU-CCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 32092 | 0.71 | 0.495303 |
Target: 5'- -cAGAGAGGGGAcGCGGGGaagagacgcggaGAGGGgGa -3' miRNA: 3'- ucUCUCUUCUCUaCGCCCC------------CUCCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 41305 | 0.71 | 0.514447 |
Target: 5'- cGuGAGggGGGG---GGGGGGGGGUGg -3' miRNA: 3'- uCuCUCuuCUCUacgCCCCCUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 29386 | 0.7 | 0.542719 |
Target: 5'- gGGGGAGAGGAGAggagagGCGGGaccgcgcGGAGaaGGCu -3' miRNA: 3'- -UCUCUCUUCUCUa-----CGCCC-------CCUC--CCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 12322 | 0.7 | 0.543703 |
Target: 5'- aGGAGAGAuGGAugGAUGgauUGGGGGAaggagGGGCGg -3' miRNA: 3'- -UCUCUCU-UCU--CUAC---GCCCCCU-----CCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 44842 | 0.7 | 0.543703 |
Target: 5'- cGGGGcGAGcGGGGUcGUGGaGGGGGGGCGc -3' miRNA: 3'- -UCUCuCUU-CUCUA-CGCC-CCCUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 30254 | 0.7 | 0.552589 |
Target: 5'- gGGAGAGAcgacgggcgccacAGAcaGcgGCgcgGGGGGAGGGUGu -3' miRNA: 3'- -UCUCUCU-------------UCU--CuaCG---CCCCCUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 49532 | 0.7 | 0.553579 |
Target: 5'- aGGAGGGggGAGGgggGUGGGauggacGGAGGagaGCGg -3' miRNA: 3'- -UCUCUCuuCUCUa--CGCCC------CCUCC---CGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 42113 | 0.7 | 0.563507 |
Target: 5'- cAGGGGGAGGGGuuaugcaaaugcAUGCaaaugaGGGGGAGGGg- -3' miRNA: 3'- -UCUCUCUUCUC------------UACG------CCCCCUCCCgc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 110370 | 0.7 | 0.563507 |
Target: 5'- uGGAGGuGggGAGAU-CGGGGGgaauuGGGGgGa -3' miRNA: 3'- -UCUCU-CuuCUCUAcGCCCCC-----UCCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 27508 | 0.7 | 0.573482 |
Target: 5'- gGGuGGGAGGGGGUGCGauGG-GGGCGu -3' miRNA: 3'- -UCuCUCUUCUCUACGCccCCuCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 66901 | 0.69 | 0.601608 |
Target: 5'- cGGAGGacgccgccGAGGAGGgccacgauggagGCGGGGGcgAGGGCa -3' miRNA: 3'- -UCUCU--------CUUCUCUa-----------CGCCCCC--UCCCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 16656 | 0.69 | 0.603625 |
Target: 5'- gGGGGAGuccGGGGGAgucCGGGGGAGuccucGGCGg -3' miRNA: 3'- -UCUCUC---UUCUCUac-GCCCCCUC-----CCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 44368 | 0.69 | 0.611703 |
Target: 5'- gGGGGAGAGGGuugcgacggucccGccGCGGGGGcgccgaggagggaGGGGCGc -3' miRNA: 3'- -UCUCUCUUCU-------------CuaCGCCCCC-------------UCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 12388 | 0.69 | 0.613724 |
Target: 5'- aGGAGAGAGcGAGA-GCGGGaacuGGAGaGGgGg -3' miRNA: 3'- -UCUCUCUU-CUCUaCGCCC----CCUC-CCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 30414 | 0.69 | 0.613724 |
Target: 5'- gGGAGAGGaaGGAGggGaGGacGGAGGGCGa -3' miRNA: 3'- -UCUCUCU--UCUCuaCgCCc-CCUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 44468 | 0.69 | 0.623836 |
Target: 5'- uGGGGGguGAGGgugGaCGGGGG-GGGUGg -3' miRNA: 3'- uCUCUCuuCUCUa--C-GCCCCCuCCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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