miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 3' -58.5 NC_006151.1 + 5826 0.69 0.633954
Target:  5'- gAGAGccGGAGGAGGagGCcGGGGAGGcuGCGg -3'
miRNA:   3'- -UCUC--UCUUCUCUa-CGcCCCCUCC--CGC- -5'
29494 3' -58.5 NC_006151.1 + 31415 0.69 0.633954
Target:  5'- -aGGGGAAGGGGaagGgGGGGGAcgGGGUGc -3'
miRNA:   3'- ucUCUCUUCUCUa--CgCCCCCU--CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 32 0.69 0.633954
Target:  5'- aAGGGGGcGGGGcuuaaaGGGGGGGGGCu -3'
miRNA:   3'- -UCUCUCuUCUCuacg--CCCCCUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 8559 0.69 0.633954
Target:  5'- nGAGAG-AGAGcGUGCGuGuGGGuGGGUGg -3'
miRNA:   3'- uCUCUCuUCUC-UACGC-C-CCCuCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 8210 0.69 0.638001
Target:  5'- gGGAGAcGAAGAGG-GCcggguccccuucccgGcGGGGAGGGCc -3'
miRNA:   3'- -UCUCU-CUUCUCUaCG---------------C-CCCCUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 79291 0.69 0.64407
Target:  5'- cGGAGAGGAGAGucccGCGccccGGGAcGGGCc -3'
miRNA:   3'- -UCUCUCUUCUCua--CGCc---CCCU-CCCGc -5'
29494 3' -58.5 NC_006151.1 + 26256 0.69 0.64407
Target:  5'- cAGAGGGGAGGGGga-GaGGGGcaaacgauGGGGCGg -3'
miRNA:   3'- -UCUCUCUUCUCUacgC-CCCC--------UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 33460 0.68 0.654178
Target:  5'- gAGAGAGAGGAGAgGCGagagaGGaGGAGaaggaggaGGCGa -3'
miRNA:   3'- -UCUCUCUUCUCUaCGC-----CC-CCUC--------CCGC- -5'
29494 3' -58.5 NC_006151.1 + 78371 0.68 0.654178
Target:  5'- cGAcGGAGGAGAaGgGGGaGGAGGGgGc -3'
miRNA:   3'- uCUcUCUUCUCUaCgCCC-CCUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 16592 0.68 0.664268
Target:  5'- uGGGGGggGAGuc-CGGGGGAguccGGGgGa -3'
miRNA:   3'- uCUCUCuuCUCuacGCCCCCU----CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 46041 0.68 0.674333
Target:  5'- cGGGGaAGAGGAuGAgccgGUaGGGGGGGGCu -3'
miRNA:   3'- -UCUC-UCUUCU-CUa---CGcCCCCUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 89120 0.68 0.684364
Target:  5'- cGAGAccGAGGGcgGCGGGaccGGGGGCGu -3'
miRNA:   3'- uCUCUc-UUCUCuaCGCCCc--CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 80437 0.68 0.693356
Target:  5'- gGGAGAGAgugguguauacucGGGGAa-CGGGGGAaGGGgGa -3'
miRNA:   3'- -UCUCUCU-------------UCUCUacGCCCCCU-CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 30329 0.68 0.694353
Target:  5'- aAGAuGAGGAG-GcgGCGGcGGcgcGAGGGCGc -3'
miRNA:   3'- -UCU-CUCUUCuCuaCGCC-CC---CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 32828 0.68 0.694353
Target:  5'- aAGAGAGAgAGAGAaagagGGGGGccGGCGg -3'
miRNA:   3'- -UCUCUCU-UCUCUacg--CCCCCucCCGC- -5'
29494 3' -58.5 NC_006151.1 + 33402 0.68 0.701315
Target:  5'- cAGAGGcGGAGAGG-GCGagcgagacacgcacGGGGAGaGGCGc -3'
miRNA:   3'- -UCUCU-CUUCUCUaCGC--------------CCCCUC-CCGC- -5'
29494 3' -58.5 NC_006151.1 + 26206 0.68 0.70825
Target:  5'- gAGAGAGuuGAGGUucgaGCGGcGGGccgccguguuuauugAGGGCa -3'
miRNA:   3'- -UCUCUCuuCUCUA----CGCC-CCC---------------UCCCGc -5'
29494 3' -58.5 NC_006151.1 + 43893 0.67 0.714169
Target:  5'- cGAGucggcgcGGAGAGggGUaGGGGAGGGgGg -3'
miRNA:   3'- uCUCu------CUUCUCuaCGcCCCCUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 142546 0.67 0.714169
Target:  5'- aGGGGGGAAcGAGGggGUugGGGGGAaGGCGc -3'
miRNA:   3'- -UCUCUCUU-CUCUa-CG--CCCCCUcCCGC- -5'
29494 3' -58.5 NC_006151.1 + 1933 0.67 0.714169
Target:  5'- cGAGGGGAGAGAaGaCGGaGGaGaAGGGCc -3'
miRNA:   3'- uCUCUCUUCUCUaC-GCC-CC-C-UCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.