Results 121 - 128 of 128 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29494 | 3' | -58.5 | NC_006151.1 | + | 29613 | 0.66 | 0.789088 |
|
Target: 5'- cGGGGGcugguguGGGAGGaGUGGGGGAauuggGGGUGg -3' miRNA: 3'- uCUCUC-------UUCUCUaCGCCCCCU-----CCCGC- -5' |
|||||||
| 29494 | 3' | -58.5 | NC_006151.1 | + | 42342 | 0.66 | 0.78999 |
|
Target: 5'- cGGGAGuGGAGcgGa-GGGGAGGGg- -3' miRNA: 3'- uCUCUCuUCUCuaCgcCCCCUCCCgc -5' |
|||||||
| 29494 | 3' | -58.5 | NC_006151.1 | + | 66838 | 0.66 | 0.78999 |
|
Target: 5'- gGGGGGGAAGAGGagaagGaCGaGaGGGccGGGGCGg -3' miRNA: 3'- -UCUCUCUUCUCUa----C-GC-C-CCC--UCCCGC- -5' |
|||||||
| 29494 | 3' | -58.5 | NC_006151.1 | + | 9538 | 0.66 | 0.798046 |
|
Target: 5'- gGGGGGGAaagaagaagaaacGGGGAaGCGGGGGAaGGa- -3' miRNA: 3'- -UCUCUCU-------------UCUCUaCGCCCCCUcCCgc -5' |
|||||||
| 29494 | 3' | -58.5 | NC_006151.1 | + | 27960 | 0.66 | 0.798934 |
|
Target: 5'- gGGAGGGAGGGGGgac-GGGGAGGaGUu -3' miRNA: 3'- -UCUCUCUUCUCUacgcCCCCUCC-CGc -5' |
|||||||
| 29494 | 3' | -58.5 | NC_006151.1 | + | 4976 | 0.66 | 0.798934 |
|
Target: 5'- cGAGAGGugguuguuguGGAGcgGCGcuuccugcgcGGGGGccGGGCGg -3' miRNA: 3'- uCUCUCU----------UCUCuaCGC----------CCCCU--CCCGC- -5' |
|||||||
| 29494 | 3' | -58.5 | NC_006151.1 | + | 8603 | 0.66 | 0.80773 |
|
Target: 5'- cGAGuauGggGGccGGUGCGGGuGuGAGGGUc -3' miRNA: 3'- uCUCu--CuuCU--CUACGCCC-C-CUCCCGc -5' |
|||||||
| 29494 | 3' | -58.5 | NC_006151.1 | + | 20133 | 0.66 | 0.80773 |
|
Target: 5'- uGGGGGgcGGGcgccGCGGGGGcGGcGCGu -3' miRNA: 3'- uCUCUCuuCUCua--CGCCCCCuCC-CGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home