Results 81 - 100 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29494 | 3' | -58.5 | NC_006151.1 | + | 16313 | 0.73 | 0.405101 |
Target: 5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3' miRNA: 3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 16348 | 0.73 | 0.405101 |
Target: 5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3' miRNA: 3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 16383 | 0.73 | 0.405101 |
Target: 5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3' miRNA: 3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 16418 | 0.73 | 0.405101 |
Target: 5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3' miRNA: 3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 16453 | 0.73 | 0.405101 |
Target: 5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3' miRNA: 3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 16488 | 0.73 | 0.405101 |
Target: 5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3' miRNA: 3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 27816 | 0.73 | 0.405101 |
Target: 5'- cGGGGGAGGGGAg--GGGGGAGGaGCc -3' miRNA: 3'- uCUCUCUUCUCUacgCCCCCUCC-CGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 80325 | 0.73 | 0.388332 |
Target: 5'- aGGAGuuuuGggGGGAc-CGGGGcGAGGGCGg -3' miRNA: 3'- -UCUCu---CuuCUCUacGCCCC-CUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 41961 | 0.74 | 0.364047 |
Target: 5'- uAGGGGGAGGGGuuAUGCagauuaGGGGGAGGGg- -3' miRNA: 3'- -UCUCUCUUCUC--UACG------CCCCCUCCCgc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 42005 | 0.74 | 0.364047 |
Target: 5'- uAGGGGGAGGGGuuAUGCagauuaGGGGGAGGGg- -3' miRNA: 3'- -UCUCUCUUCUC--UACG------CCCCCUCCCgc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 130935 | 0.74 | 0.364047 |
Target: 5'- cGGGGGcGGGGGcgGCGGGGGGucgcgcGGGCGc -3' miRNA: 3'- uCUCUC-UUCUCuaCGCCCCCU------CCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 44336 | 0.74 | 0.364047 |
Target: 5'- aGGAGAGGAGGGccGCGGacGGGuGGGaCGg -3' miRNA: 3'- -UCUCUCUUCUCuaCGCC--CCCuCCC-GC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 33173 | 0.74 | 0.35619 |
Target: 5'- cGGGGAGGaagGGAGGUGUGGGGGGauGGCc -3' miRNA: 3'- -UCUCUCU---UCUCUACGCCCCCUc-CCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 41917 | 0.74 | 0.35619 |
Target: 5'- aGGGGGGAGGGGuuAUGCagauuaGGGGGAGGGg- -3' miRNA: 3'- -UCUCUCUUCUC--UACG------CCCCCUCCCgc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 8043 | 0.74 | 0.348452 |
Target: 5'- gGGAGAGAGGgAGuUG-GGGGGAGGGg- -3' miRNA: 3'- -UCUCUCUUC-UCuACgCCCCCUCCCgc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 43928 | 0.74 | 0.348452 |
Target: 5'- gAGAGAGGAGGGAga-GGGGccGGGGGCc -3' miRNA: 3'- -UCUCUCUUCUCUacgCCCC--CUCCCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 31661 | 0.75 | 0.318712 |
Target: 5'- gGGAGGGAGGAGG-GCGGaGGaAGGGCc -3' miRNA: 3'- -UCUCUCUUCUCUaCGCC-CCcUCCCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 87785 | 0.75 | 0.297686 |
Target: 5'- gGGAGAGAgugugggugGGAGAggGUGGGaGAGGGCGc -3' miRNA: 3'- -UCUCUCU---------UCUCUa-CGCCCcCUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 33238 | 0.75 | 0.29092 |
Target: 5'- cGGGcGGGAGGGGGUcCGGGGGAaGGGUGg -3' miRNA: 3'- -UCU-CUCUUCUCUAcGCCCCCU-CCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 72589 | 0.76 | 0.271347 |
Target: 5'- -cAGAGucGGGGUGaGGGGGGGGGCa -3' miRNA: 3'- ucUCUCuuCUCUACgCCCCCUCCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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