Results 101 - 120 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29494 | 3' | -58.5 | NC_006151.1 | + | 10360 | 0.76 | 0.265062 |
Target: 5'- gGGAGGGGAGGGGaGgGaGGGGAGGGgGu -3' miRNA: 3'- -UCUCUCUUCUCUaCgC-CCCCUCCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 16727 | 0.76 | 0.252847 |
Target: 5'- cGGGGGGggGGGAaGgGGGGGAaGGGgGg -3' miRNA: 3'- -UCUCUCuuCUCUaCgCCCCCU-CCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 8109 | 0.77 | 0.246915 |
Target: 5'- gGGAGGGggGGGGUcggagcGCGGaccccgcccgguGGGGGGGCGg -3' miRNA: 3'- -UCUCUCuuCUCUA------CGCC------------CCCUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 80245 | 0.77 | 0.224333 |
Target: 5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGa -3' miRNA: 3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 44778 | 0.77 | 0.223792 |
Target: 5'- cGGAGAGAgcggGGAGAaGCGGGGGgugaaagGGGGUGc -3' miRNA: 3'- -UCUCUCU----UCUCUaCGCCCCC-------UCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 93425 | 0.77 | 0.218969 |
Target: 5'- gAGAGAGAGGAGGaggggggcgaGCGGGGGucgccgccgcGGGGCGc -3' miRNA: 3'- -UCUCUCUUCUCUa---------CGCCCCC----------UCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 43334 | 0.77 | 0.218969 |
Target: 5'- cGGAGAGGaaagaGGAGAaGCGGGaGGGGGGgGg -3' miRNA: 3'- -UCUCUCU-----UCUCUaCGCCC-CCUCCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 80215 | 0.78 | 0.213714 |
Target: 5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3' miRNA: 3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 80185 | 0.78 | 0.213714 |
Target: 5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3' miRNA: 3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 80155 | 0.78 | 0.213714 |
Target: 5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3' miRNA: 3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 80125 | 0.78 | 0.213714 |
Target: 5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3' miRNA: 3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 80095 | 0.78 | 0.213714 |
Target: 5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3' miRNA: 3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 80065 | 0.78 | 0.213714 |
Target: 5'- gGGAGAGAGG-GcgGUGGGaGaGAGGGCGg -3' miRNA: 3'- -UCUCUCUUCuCuaCGCCC-C-CUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 29788 | 0.78 | 0.20353 |
Target: 5'- gAGAGAGAGGAGA-GgGaGGGGAGGGg- -3' miRNA: 3'- -UCUCUCUUCUCUaCgC-CCCCUCCCgc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 44297 | 0.78 | 0.198597 |
Target: 5'- aGGGGGGAacGGGGAUGCGaaGGGGAGGGg- -3' miRNA: 3'- -UCUCUCU--UCUCUACGC--CCCCUCCCgc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 10389 | 0.79 | 0.184421 |
Target: 5'- cGGGGGGAAGGGAggGgGGGGGAGaGCGg -3' miRNA: 3'- -UCUCUCUUCUCUa-CgCCCCCUCcCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 71553 | 0.8 | 0.162776 |
Target: 5'- cGAGGGAGGGGGggGCgaGGGGGAcGGGCGg -3' miRNA: 3'- uCUCUCUUCUCUa-CG--CCCCCU-CCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 30025 | 0.8 | 0.162776 |
Target: 5'- aGGAGGGggGAGGagGgGGGGGAGGaGUGa -3' miRNA: 3'- -UCUCUCuuCUCUa-CgCCCCCUCC-CGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 11802 | 0.8 | 0.15873 |
Target: 5'- gAGAGGGgcGGGGUG-GGGuGGGGGGCGg -3' miRNA: 3'- -UCUCUCuuCUCUACgCCC-CCUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 41369 | 0.8 | 0.150911 |
Target: 5'- uGGAGGGGAGGGAaagGCGGuGGGAgagcGGGCGg -3' miRNA: 3'- -UCUCUCUUCUCUa--CGCC-CCCU----CCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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