Results 121 - 128 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29494 | 3' | -58.5 | NC_006151.1 | + | 34387 | 0.8 | 0.148635 |
Target: 5'- gAGAGAGAuAGAGggGUGGGGGAgaggaggggguggguGGGCGa -3' miRNA: 3'- -UCUCUCU-UCUCuaCGCCCCCU---------------CCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 11725 | 0.81 | 0.139838 |
Target: 5'- cGAGAGggGGGA-GCGGGGGugAGGGgGa -3' miRNA: 3'- uCUCUCuuCUCUaCGCCCCC--UCCCgC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 29448 | 0.82 | 0.116843 |
Target: 5'- cGGGGAGAGGGGAcGCGGaGGGAgcGGGCGc -3' miRNA: 3'- -UCUCUCUUCUCUaCGCC-CCCU--CCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 29349 | 0.83 | 0.10263 |
Target: 5'- gGGGGGGggGAGAggggGCGGGGaGcGGGGCGg -3' miRNA: 3'- -UCUCUCuuCUCUa---CGCCCC-C-UCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 22507 | 0.84 | 0.078956 |
Target: 5'- gAGAGAGggGGGGaaucGCGGGGGAgucGGGCGg -3' miRNA: 3'- -UCUCUCuuCUCUa---CGCCCCCU---CCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 27536 | 0.85 | 0.069171 |
Target: 5'- gGGGGGGggGGGggGgGGGGGGGGGCu -3' miRNA: 3'- -UCUCUCuuCUCuaCgCCCCCUCCCGc -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 29658 | 0.87 | 0.050224 |
Target: 5'- uGGGGGGAGGAGGaagGgGGGGGGGGGCGg -3' miRNA: 3'- -UCUCUCUUCUCUa--CgCCCCCUCCCGC- -5' |
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29494 | 3' | -58.5 | NC_006151.1 | + | 42984 | 1.09 | 0.001482 |
Target: 5'- gAGAGAGAAGAGAUGCGGGGGAGGGCGg -3' miRNA: 3'- -UCUCUCUUCUCUACGCCCCCUCCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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