miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 3' -58.5 NC_006151.1 + 30329 0.68 0.694353
Target:  5'- aAGAuGAGGAG-GcgGCGGcGGcgcGAGGGCGc -3'
miRNA:   3'- -UCU-CUCUUCuCuaCGCC-CC---CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 30414 0.69 0.613724
Target:  5'- gGGAGAGGaaGGAGggGaGGacGGAGGGCGa -3'
miRNA:   3'- -UCUCUCU--UCUCuaCgCCc-CCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 30844 0.67 0.724957
Target:  5'- cGGAGAGGAGcgaGGAggacuggcggcggcgGCGGaGGAGGGgGg -3'
miRNA:   3'- -UCUCUCUUC---UCUa--------------CGCCcCCUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 30965 0.67 0.74336
Target:  5'- ---cGGGAGAGcggGCGGGGGAcgGGGaCGg -3'
miRNA:   3'- ucucUCUUCUCua-CGCCCCCU--CCC-GC- -5'
29494 3' -58.5 NC_006151.1 + 31415 0.69 0.633954
Target:  5'- -aGGGGAAGGGGaagGgGGGGGAcgGGGUGc -3'
miRNA:   3'- ucUCUCUUCUCUa--CgCCCCCU--CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 31661 0.75 0.318712
Target:  5'- gGGAGGGAGGAGG-GCGGaGGaAGGGCc -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCC-CCcUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 32092 0.71 0.495303
Target:  5'- -cAGAGAGGGGAcGCGGGGaagagacgcggaGAGGGgGa -3'
miRNA:   3'- ucUCUCUUCUCUaCGCCCC------------CUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 32828 0.68 0.694353
Target:  5'- aAGAGAGAgAGAGAaagagGGGGGccGGCGg -3'
miRNA:   3'- -UCUCUCU-UCUCUacg--CCCCCucCCGC- -5'
29494 3' -58.5 NC_006151.1 + 33079 0.71 0.476488
Target:  5'- cGGAGGGGGcGAGGgcggGCGGuGGAGGGgGg -3'
miRNA:   3'- -UCUCUCUU-CUCUa---CGCCcCCUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 33173 0.74 0.35619
Target:  5'- cGGGGAGGaagGGAGGUGUGGGGGGauGGCc -3'
miRNA:   3'- -UCUCUCU---UCUCUACGCCCCCUc-CCGc -5'
29494 3' -58.5 NC_006151.1 + 33238 0.75 0.29092
Target:  5'- cGGGcGGGAGGGGGUcCGGGGGAaGGGUGg -3'
miRNA:   3'- -UCU-CUCUUCUCUAcGCCCCCU-CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 33402 0.68 0.701315
Target:  5'- cAGAGGcGGAGAGG-GCGagcgagacacgcacGGGGAGaGGCGc -3'
miRNA:   3'- -UCUCU-CUUCUCUaCGC--------------CCCCUC-CCGC- -5'
29494 3' -58.5 NC_006151.1 + 33460 0.68 0.654178
Target:  5'- gAGAGAGAGGAGAgGCGagagaGGaGGAGaaggaggaGGCGa -3'
miRNA:   3'- -UCUCUCUUCUCUaCGC-----CC-CCUC--------CCGC- -5'
29494 3' -58.5 NC_006151.1 + 34387 0.8 0.148635
Target:  5'- gAGAGAGAuAGAGggGUGGGGGAgaggaggggguggguGGGCGa -3'
miRNA:   3'- -UCUCUCU-UCUCuaCGCCCCCU---------------CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 40845 0.67 0.74336
Target:  5'- uGGAGGGucuugguGGGGGUGaCGGGGGuccuccuccuggAGGGUc -3'
miRNA:   3'- -UCUCUCu------UCUCUAC-GCCCCC------------UCCCGc -5'
29494 3' -58.5 NC_006151.1 + 41305 0.71 0.514447
Target:  5'- cGuGAGggGGGG---GGGGGGGGGUGg -3'
miRNA:   3'- uCuCUCuuCUCUacgCCCCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 41369 0.8 0.150911
Target:  5'- uGGAGGGGAGGGAaagGCGGuGGGAgagcGGGCGg -3'
miRNA:   3'- -UCUCUCUUCUCUa--CGCC-CCCU----CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 41917 0.74 0.35619
Target:  5'- aGGGGGGAGGGGuuAUGCagauuaGGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCUUCUC--UACG------CCCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 41961 0.74 0.364047
Target:  5'- uAGGGGGAGGGGuuAUGCagauuaGGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCUUCUC--UACG------CCCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 42005 0.74 0.364047
Target:  5'- uAGGGGGAGGGGuuAUGCagauuaGGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCUUCUC--UACG------CCCCCUCCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.