miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 3' -58.5 NC_006151.1 + 42113 0.7 0.563507
Target:  5'- cAGGGGGAGGGGuuaugcaaaugcAUGCaaaugaGGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCUUCUC------------UACG------CCCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 42342 0.66 0.78999
Target:  5'- cGGGAGuGGAGcgGa-GGGGAGGGg- -3'
miRNA:   3'- uCUCUCuUCUCuaCgcCCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 42984 1.09 0.001482
Target:  5'- gAGAGAGAAGAGAUGCGGGGGAGGGCGg -3'
miRNA:   3'- -UCUCUCUUCUCUACGCCCCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 43246 0.66 0.788185
Target:  5'- cGGGGAGugcgugcggguguGGGGUGCucucgcucugcuuugGGGGGGGGGUc -3'
miRNA:   3'- -UCUCUCuu-----------CUCUACG---------------CCCCCUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 43334 0.77 0.218969
Target:  5'- cGGAGAGGaaagaGGAGAaGCGGGaGGGGGGgGg -3'
miRNA:   3'- -UCUCUCU-----UCUCUaCGCCC-CCUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 43709 0.71 0.476488
Target:  5'- gGGAGAGGaaccgaaaaaucGGGGAcgguggggGCGGGGGAgacGGGCa -3'
miRNA:   3'- -UCUCUCU------------UCUCUa-------CGCCCCCU---CCCGc -5'
29494 3' -58.5 NC_006151.1 + 43893 0.67 0.714169
Target:  5'- cGAGucggcgcGGAGAGggGUaGGGGAGGGgGg -3'
miRNA:   3'- uCUCu------CUUCUCuaCGcCCCCUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 43928 0.74 0.348452
Target:  5'- gAGAGAGGAGGGAga-GGGGccGGGGGCc -3'
miRNA:   3'- -UCUCUCUUCUCUacgCCCC--CUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 44297 0.78 0.198597
Target:  5'- aGGGGGGAacGGGGAUGCGaaGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCU--UCUCUACGC--CCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 44336 0.74 0.364047
Target:  5'- aGGAGAGGAGGGccGCGGacGGGuGGGaCGg -3'
miRNA:   3'- -UCUCUCUUCUCuaCGCC--CCCuCCC-GC- -5'
29494 3' -58.5 NC_006151.1 + 44368 0.69 0.611703
Target:  5'- gGGGGAGAGGGuugcgacggucccGccGCGGGGGcgccgaggagggaGGGGCGc -3'
miRNA:   3'- -UCUCUCUUCU-------------CuaCGCCCCC-------------UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 44468 0.69 0.623836
Target:  5'- uGGGGGguGAGGgugGaCGGGGG-GGGUGg -3'
miRNA:   3'- uCUCUCuuCUCUa--C-GCCCCCuCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 44778 0.77 0.223792
Target:  5'- cGGAGAGAgcggGGAGAaGCGGGGGgugaaagGGGGUGc -3'
miRNA:   3'- -UCUCUCU----UCUCUaCGCCCCC-------UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 44842 0.7 0.543703
Target:  5'- cGGGGcGAGcGGGGUcGUGGaGGGGGGGCGc -3'
miRNA:   3'- -UCUCuCUU-CUCUA-CGCC-CCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 45039 0.73 0.413656
Target:  5'- uGGGGGAagcgugGGGGGUGUGGGGGGauGGGaCGg -3'
miRNA:   3'- uCUCUCU------UCUCUACGCCCCCU--CCC-GC- -5'
29494 3' -58.5 NC_006151.1 + 45595 0.67 0.733713
Target:  5'- aGGGGGcGggGGGAgccccgacgggGCGGGcGGAaggGGGCGu -3'
miRNA:   3'- -UCUCU-CuuCUCUa----------CGCCC-CCU---CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 46041 0.68 0.674333
Target:  5'- cGGGGaAGAGGAuGAgccgGUaGGGGGGGGCu -3'
miRNA:   3'- -UCUC-UCUUCU-CUa---CGcCCCCUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 49532 0.7 0.553579
Target:  5'- aGGAGGGggGAGGgggGUGGGauggacGGAGGagaGCGg -3'
miRNA:   3'- -UCUCUCuuCUCUa--CGCCC------CCUCC---CGC- -5'
29494 3' -58.5 NC_006151.1 + 66838 0.66 0.78999
Target:  5'- gGGGGGGAAGAGGagaagGaCGaGaGGGccGGGGCGg -3'
miRNA:   3'- -UCUCUCUUCUCUa----C-GC-C-CCC--UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 66901 0.69 0.601608
Target:  5'- cGGAGGacgccgccGAGGAGGgccacgauggagGCGGGGGcgAGGGCa -3'
miRNA:   3'- -UCUCU--------CUUCUCUa-----------CGCCCCC--UCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.