miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 3' -58.5 NC_006151.1 + 32828 0.68 0.694353
Target:  5'- aAGAGAGAgAGAGAaagagGGGGGccGGCGg -3'
miRNA:   3'- -UCUCUCU-UCUCUacg--CCCCCucCCGC- -5'
29494 3' -58.5 NC_006151.1 + 32092 0.71 0.495303
Target:  5'- -cAGAGAGGGGAcGCGGGGaagagacgcggaGAGGGgGa -3'
miRNA:   3'- ucUCUCUUCUCUaCGCCCC------------CUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 31661 0.75 0.318712
Target:  5'- gGGAGGGAGGAGG-GCGGaGGaAGGGCc -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCC-CCcUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 31415 0.69 0.633954
Target:  5'- -aGGGGAAGGGGaagGgGGGGGAcgGGGUGc -3'
miRNA:   3'- ucUCUCUUCUCUa--CgCCCCCU--CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 30965 0.67 0.74336
Target:  5'- ---cGGGAGAGcggGCGGGGGAcgGGGaCGg -3'
miRNA:   3'- ucucUCUUCUCua-CGCCCCCU--CCC-GC- -5'
29494 3' -58.5 NC_006151.1 + 30844 0.67 0.724957
Target:  5'- cGGAGAGGAGcgaGGAggacuggcggcggcgGCGGaGGAGGGgGg -3'
miRNA:   3'- -UCUCUCUUC---UCUa--------------CGCCcCCUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 30414 0.69 0.613724
Target:  5'- gGGAGAGGaaGGAGggGaGGacGGAGGGCGa -3'
miRNA:   3'- -UCUCUCU--UCUCuaCgCCc-CCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 30329 0.68 0.694353
Target:  5'- aAGAuGAGGAG-GcgGCGGcGGcgcGAGGGCGc -3'
miRNA:   3'- -UCU-CUCUUCuCuaCGCC-CC---CUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 30254 0.7 0.552589
Target:  5'- gGGAGAGAcgacgggcgccacAGAcaGcgGCgcgGGGGGAGGGUGu -3'
miRNA:   3'- -UCUCUCU-------------UCU--CuaCG---CCCCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 30156 0.72 0.42232
Target:  5'- uGGGA-AAGAGA-GCGcGGGAGGGCGg -3'
miRNA:   3'- uCUCUcUUCUCUaCGCcCCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 30025 0.8 0.162776
Target:  5'- aGGAGGGggGAGGagGgGGGGGAGGaGUGa -3'
miRNA:   3'- -UCUCUCuuCUCUa-CgCCCCCUCC-CGC- -5'
29494 3' -58.5 NC_006151.1 + 29788 0.78 0.20353
Target:  5'- gAGAGAGAGGAGA-GgGaGGGGAGGGg- -3'
miRNA:   3'- -UCUCUCUUCUCUaCgC-CCCCUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 29658 0.87 0.050224
Target:  5'- uGGGGGGAGGAGGaagGgGGGGGGGGGCGg -3'
miRNA:   3'- -UCUCUCUUCUCUa--CgCCCCCUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 29613 0.66 0.789088
Target:  5'- cGGGGGcugguguGGGAGGaGUGGGGGAauuggGGGUGg -3'
miRNA:   3'- uCUCUC-------UUCUCUaCGCCCCCU-----CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 29448 0.82 0.116843
Target:  5'- cGGGGAGAGGGGAcGCGGaGGGAgcGGGCGc -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCC-CCCU--CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 29386 0.7 0.542719
Target:  5'- gGGGGAGAGGAGAggagagGCGGGaccgcgcGGAGaaGGCu -3'
miRNA:   3'- -UCUCUCUUCUCUa-----CGCCC-------CCUC--CCGc -5'
29494 3' -58.5 NC_006151.1 + 29349 0.83 0.10263
Target:  5'- gGGGGGGggGAGAggggGCGGGGaGcGGGGCGg -3'
miRNA:   3'- -UCUCUCuuCUCUa---CGCCCC-C-UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 27960 0.66 0.798934
Target:  5'- gGGAGGGAGGGGGgac-GGGGAGGaGUu -3'
miRNA:   3'- -UCUCUCUUCUCUacgcCCCCUCC-CGc -5'
29494 3' -58.5 NC_006151.1 + 27816 0.73 0.405101
Target:  5'- cGGGGGAGGGGAg--GGGGGAGGaGCc -3'
miRNA:   3'- uCUCUCUUCUCUacgCCCCCUCC-CGc -5'
29494 3' -58.5 NC_006151.1 + 27536 0.85 0.069171
Target:  5'- gGGGGGGggGGGggGgGGGGGGGGGCu -3'
miRNA:   3'- -UCUCUCuuCUCuaCgCCCCCUCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.