miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 3' -58.5 NC_006151.1 + 27508 0.7 0.573482
Target:  5'- gGGuGGGAGGGGGUGCGauGG-GGGCGu -3'
miRNA:   3'- -UCuCUCUUCUCUACGCccCCuCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 27380 0.67 0.762359
Target:  5'- cGAcGGgcGAGAacgGC-GGGGAGGGCa -3'
miRNA:   3'- uCUcUCuuCUCUa--CGcCCCCUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 27302 0.71 0.495303
Target:  5'- uGGGGGGcguGGGGGUcgagGCGGGGGAcGGGgGg -3'
miRNA:   3'- -UCUCUCu--UCUCUA----CGCCCCCU-CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 26296 0.71 0.480223
Target:  5'- uGGGGuGGggGGGGUG-GGGGGAggaaagaacagcgcgGGGCGa -3'
miRNA:   3'- -UCUC-UCuuCUCUACgCCCCCU---------------CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 26256 0.69 0.64407
Target:  5'- cAGAGGGGAGGGGga-GaGGGGcaaacgauGGGGCGg -3'
miRNA:   3'- -UCUCUCUUCUCUacgC-CCCC--------UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 26206 0.68 0.70825
Target:  5'- gAGAGAGuuGAGGUucgaGCGGcGGGccgccguguuuauugAGGGCa -3'
miRNA:   3'- -UCUCUCuuCUCUA----CGCC-CCC---------------UCCCGc -5'
29494 3' -58.5 NC_006151.1 + 22507 0.84 0.078956
Target:  5'- gAGAGAGggGGGGaaucGCGGGGGAgucGGGCGg -3'
miRNA:   3'- -UCUCUCuuCUCUa---CGCCCCCU---CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 20133 0.66 0.80773
Target:  5'- uGGGGGgcGGGcgccGCGGGGGcGGcGCGu -3'
miRNA:   3'- uCUCUCuuCUCua--CGCCCCCuCC-CGC- -5'
29494 3' -58.5 NC_006151.1 + 16727 0.76 0.252847
Target:  5'- cGGGGGGggGGGAaGgGGGGGAaGGGgGg -3'
miRNA:   3'- -UCUCUCuuCUCUaCgCCCCCU-CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 16656 0.69 0.603625
Target:  5'- gGGGGAGuccGGGGGAgucCGGGGGAGuccucGGCGg -3'
miRNA:   3'- -UCUCUC---UUCUCUac-GCCCCCUC-----CCGC- -5'
29494 3' -58.5 NC_006151.1 + 16592 0.68 0.664268
Target:  5'- uGGGGGggGAGuc-CGGGGGAguccGGGgGa -3'
miRNA:   3'- uCUCUCuuCUCuacGCCCCCU----CCCgC- -5'
29494 3' -58.5 NC_006151.1 + 16488 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16453 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16418 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16383 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16348 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16313 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16278 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16243 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 16208 0.73 0.405101
Target:  5'- gAGGGAGAGGGGA-GUGGGauGGGGUGg -3'
miRNA:   3'- -UCUCUCUUCUCUaCGCCCccUCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.