Results 121 - 128 of 128 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29494 | 3' | -58.5 | NC_006151.1 | + | 8109 | 0.77 | 0.246915 |
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Target: 5'- gGGAGGGggGGGGUcggagcGCGGaccccgcccgguGGGGGGGCGg -3' miRNA: 3'- -UCUCUCuuCUCUA------CGCC------------CCCUCCCGC- -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 8043 | 0.74 | 0.348452 |
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Target: 5'- gGGAGAGAGGgAGuUG-GGGGGAGGGg- -3' miRNA: 3'- -UCUCUCUUC-UCuACgCCCCCUCCCgc -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 5826 | 0.69 | 0.633954 |
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Target: 5'- gAGAGccGGAGGAGGagGCcGGGGAGGcuGCGg -3' miRNA: 3'- -UCUC--UCUUCUCUa-CGcCCCCUCC--CGC- -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 4976 | 0.66 | 0.798934 |
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Target: 5'- cGAGAGGugguuguuguGGAGcgGCGcuuccugcgcGGGGGccGGGCGg -3' miRNA: 3'- uCUCUCU----------UCUCuaCGC----------CCCCU--CCCGC- -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 1933 | 0.67 | 0.714169 |
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Target: 5'- cGAGGGGAGAGAaGaCGGaGGaGaAGGGCc -3' miRNA: 3'- uCUCUCUUCUCUaC-GCC-CC-C-UCCCGc -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 1784 | 0.67 | 0.752912 |
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Target: 5'- aGGAGAgGAGGAGGgccaccggGCcGGGGAGgcaGGCGc -3' miRNA: 3'- -UCUCU-CUUCUCUa-------CGcCCCCUC---CCGC- -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 1621 | 0.67 | 0.74336 |
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Target: 5'- aGGAgGAGAAGGGGacCGGGGGAccGCGg -3' miRNA: 3'- -UCU-CUCUUCUCUacGCCCCCUccCGC- -5' |
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| 29494 | 3' | -58.5 | NC_006151.1 | + | 32 | 0.69 | 0.633954 |
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Target: 5'- aAGGGGGcGGGGcuuaaaGGGGGGGGGCu -3' miRNA: 3'- -UCUCUCuUCUCuacg--CCCCCUCCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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