miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29494 3' -58.5 NC_006151.1 + 66838 0.66 0.78999
Target:  5'- gGGGGGGAAGAGGagaagGaCGaGaGGGccGGGGCGg -3'
miRNA:   3'- -UCUCUCUUCUCUa----C-GC-C-CCC--UCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 9538 0.66 0.798046
Target:  5'- gGGGGGGAaagaagaagaaacGGGGAaGCGGGGGAaGGa- -3'
miRNA:   3'- -UCUCUCU-------------UCUCUaCGCCCCCUcCCgc -5'
29494 3' -58.5 NC_006151.1 + 27960 0.66 0.798934
Target:  5'- gGGAGGGAGGGGGgac-GGGGAGGaGUu -3'
miRNA:   3'- -UCUCUCUUCUCUacgcCCCCUCC-CGc -5'
29494 3' -58.5 NC_006151.1 + 4976 0.66 0.798934
Target:  5'- cGAGAGGugguuguuguGGAGcgGCGcuuccugcgcGGGGGccGGGCGg -3'
miRNA:   3'- uCUCUCU----------UCUCuaCGC----------CCCCU--CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 20133 0.66 0.80773
Target:  5'- uGGGGGgcGGGcgccGCGGGGGcGGcGCGu -3'
miRNA:   3'- uCUCUCuuCUCua--CGCCCCCuCC-CGC- -5'
29494 3' -58.5 NC_006151.1 + 27380 0.67 0.762359
Target:  5'- cGAcGGgcGAGAacgGC-GGGGAGGGCa -3'
miRNA:   3'- uCUcUCuuCUCUa--CGcCCCCUCCCGc -5'
29494 3' -58.5 NC_006151.1 + 15796 0.67 0.762359
Target:  5'- cGAG-GAAGGGGagGaCGGGGGGGaagacGGCGa -3'
miRNA:   3'- uCUCuCUUCUCUa-C-GCCCCCUC-----CCGC- -5'
29494 3' -58.5 NC_006151.1 + 142546 0.67 0.714169
Target:  5'- aGGGGGGAAcGAGGggGUugGGGGGAaGGCGc -3'
miRNA:   3'- -UCUCUCUU-CUCUa-CG--CCCCCUcCCGC- -5'
29494 3' -58.5 NC_006151.1 + 1933 0.67 0.714169
Target:  5'- cGAGGGGAGAGAaGaCGGaGGaGaAGGGCc -3'
miRNA:   3'- uCUCUCUUCUCUaC-GCC-CC-C-UCCCGc -5'
29494 3' -58.5 NC_006151.1 + 131717 0.67 0.72398
Target:  5'- cGGGGGAuGAGGUgguagGCGGGGuGGcGGGCc -3'
miRNA:   3'- uCUCUCUuCUCUA-----CGCCCC-CU-CCCGc -5'
29494 3' -58.5 NC_006151.1 + 30844 0.67 0.724957
Target:  5'- cGGAGAGGAGcgaGGAggacuggcggcggcgGCGGaGGAGGGgGg -3'
miRNA:   3'- -UCUCUCUUC---UCUa--------------CGCCcCCUCCCgC- -5'
29494 3' -58.5 NC_006151.1 + 45595 0.67 0.733713
Target:  5'- aGGGGGcGggGGGAgccccgacgggGCGGGcGGAaggGGGCGu -3'
miRNA:   3'- -UCUCU-CuuCUCUa----------CGCCC-CCU---CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 137598 0.67 0.733713
Target:  5'- -cGGGGucGGGAU-CGGGGGcgcGGGCGg -3'
miRNA:   3'- ucUCUCuuCUCUAcGCCCCCu--CCCGC- -5'
29494 3' -58.5 NC_006151.1 + 1621 0.67 0.74336
Target:  5'- aGGAgGAGAAGGGGacCGGGGGAccGCGg -3'
miRNA:   3'- -UCU-CUCUUCUCUacGCCCCCUccCGC- -5'
29494 3' -58.5 NC_006151.1 + 40845 0.67 0.74336
Target:  5'- uGGAGGGucuugguGGGGGUGaCGGGGGuccuccuccuggAGGGUc -3'
miRNA:   3'- -UCUCUCu------UCUCUAC-GCCCCC------------UCCCGc -5'
29494 3' -58.5 NC_006151.1 + 30965 0.67 0.74336
Target:  5'- ---cGGGAGAGcggGCGGGGGAcgGGGaCGg -3'
miRNA:   3'- ucucUCUUCUCua-CGCCCCCU--CCC-GC- -5'
29494 3' -58.5 NC_006151.1 + 1784 0.67 0.752912
Target:  5'- aGGAGAgGAGGAGGgccaccggGCcGGGGAGgcaGGCGc -3'
miRNA:   3'- -UCUCU-CUUCUCUa-------CGcCCCCUC---CCGC- -5'
29494 3' -58.5 NC_006151.1 + 9503 0.67 0.752912
Target:  5'- gGGAGAGcGGGGcGUGUGGGGaaggaaGAGGGg- -3'
miRNA:   3'- -UCUCUCuUCUC-UACGCCCC------CUCCCgc -5'
29494 3' -58.5 NC_006151.1 + 135085 0.67 0.752912
Target:  5'- --cGGGcGGGGGcgGCGGGGccGGGCGg -3'
miRNA:   3'- ucuCUC-UUCUCuaCGCCCCcuCCCGC- -5'
29494 3' -58.5 NC_006151.1 + 10093 0.67 0.752912
Target:  5'- cGGAG-GAAGgcGGGUGCGGaGGAGGaaGCGc -3'
miRNA:   3'- -UCUCuCUUC--UCUACGCCcCCUCC--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.