Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29494 | 5' | -56.2 | NC_006151.1 | + | 54181 | 0.66 | 0.911448 |
Target: 5'- gGGCGCCCCcUCGCGgaUCCUC-AUCc -3' miRNA: 3'- -CCGUGGGGaGGUGUagAGGAGcUAGc -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 141383 | 0.66 | 0.911448 |
Target: 5'- gGGCggGCCCCgggcaaacagCgGCGUgUCCggCGAUCGg -3' miRNA: 3'- -CCG--UGGGGa---------GgUGUAgAGGa-GCUAGC- -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 32391 | 0.66 | 0.89262 |
Target: 5'- aGCGCCCCggcuUCUGCuucuuauUCUCCUCucUCGg -3' miRNA: 3'- cCGUGGGG----AGGUGu------AGAGGAGcuAGC- -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 36250 | 0.66 | 0.88589 |
Target: 5'- cGGguCCCCggccgCCGgGUC-CCcCGGUCGg -3' miRNA: 3'- -CCguGGGGa----GGUgUAGaGGaGCUAGC- -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 23221 | 0.67 | 0.841039 |
Target: 5'- cGGC-CUCCUCCucgguCAcCUCCUCGcccUCGg -3' miRNA: 3'- -CCGuGGGGAGGu----GUaGAGGAGCu--AGC- -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 20419 | 0.67 | 0.849019 |
Target: 5'- cGC-CCCCUCCuCGUCcUCCUCcucuucGUCGg -3' miRNA: 3'- cCGuGGGGAGGuGUAG-AGGAGc-----UAGC- -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 46766 | 0.67 | 0.849019 |
Target: 5'- cGGCucGCUCCUCCcccuCGUCuucacccuccUCCUCGAUgCGg -3' miRNA: 3'- -CCG--UGGGGAGGu---GUAG----------AGGAGCUA-GC- -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 36649 | 0.67 | 0.855264 |
Target: 5'- cGGCGCcCCCUCCGCcggaggggaCCgCGGUCGu -3' miRNA: 3'- -CCGUG-GGGAGGUGuaga-----GGaGCUAGC- -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 10534 | 0.67 | 0.856805 |
Target: 5'- gGGCGCCUCUCCACGccccgUUCCgccCGG-CGc -3' miRNA: 3'- -CCGUGGGGAGGUGUa----GAGGa--GCUaGC- -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 72039 | 0.67 | 0.856805 |
Target: 5'- gGGCGCCCCgCCGCGcagCgUCUCGG-CGg -3' miRNA: 3'- -CCGUGGGGaGGUGUa--GaGGAGCUaGC- -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 7876 | 0.67 | 0.871771 |
Target: 5'- -cCACCCCUCUAUcucucUCUCC-CGGUCc -3' miRNA: 3'- ccGUGGGGAGGUGu----AGAGGaGCUAGc -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 59264 | 0.67 | 0.878939 |
Target: 5'- aGGC-CUCCUcCCACAUCaCCUUGAa-- -3' miRNA: 3'- -CCGuGGGGA-GGUGUAGaGGAGCUagc -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 132872 | 0.67 | 0.878939 |
Target: 5'- cGCGCCCC-CCAgCAgggCCUCG-UCGa -3' miRNA: 3'- cCGUGGGGaGGU-GUagaGGAGCuAGC- -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 137436 | 0.67 | 0.878939 |
Target: 5'- gGGguCCgCCUCCGCGgcCUCCUcCGA-CGa -3' miRNA: 3'- -CCguGG-GGAGGUGUa-GAGGA-GCUaGC- -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 27215 | 0.66 | 0.88589 |
Target: 5'- cGGgGCCCCgcgcgCCguggacgcGCAcCUCCUCGGggUCGg -3' miRNA: 3'- -CCgUGGGGa----GG--------UGUaGAGGAGCU--AGC- -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 83338 | 0.66 | 0.88589 |
Target: 5'- aGGCGCgCgUCCACGUgCUCCccggCGcgCGc -3' miRNA: 3'- -CCGUGgGgAGGUGUA-GAGGa---GCuaGC- -5' |
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29494 | 5' | -56.2 | NC_006151.1 | + | 36407 | 0.66 | 0.91726 |
Target: 5'- gGGCGcucgucCCCCUCCGCAgcCUCCcCGGc-- -3' miRNA: 3'- -CCGU------GGGGAGGUGUa-GAGGaGCUagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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