miRNA display CGI


Results 101 - 120 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 3' -65.2 NC_006151.1 + 48218 0.68 0.424006
Target:  5'- cGCCCCCcaCCCGCgcuccCCGgCgCGAGGaGCUg -3'
miRNA:   3'- -CGGGGGa-GGGCG-----GGCgG-GCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 101929 0.68 0.424006
Target:  5'- gGCCCCCguggCCgGCgaGCCagGAGG-ACCu -3'
miRNA:   3'- -CGGGGGa---GGgCGggCGGg-CUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 81686 0.68 0.424006
Target:  5'- cGCCUCggCgacggUCGCCCGCgCGAGGUccaGCCg -3'
miRNA:   3'- -CGGGGgaG-----GGCGGGCGgGCUCCA---UGG- -5'
29497 3' -65.2 NC_006151.1 + 56430 0.68 0.424006
Target:  5'- gGCCCaCCUCa-GCCCGCUCGAcgagacgcGcGUGCUg -3'
miRNA:   3'- -CGGG-GGAGggCGGGCGGGCU--------C-CAUGG- -5'
29497 3' -65.2 NC_006151.1 + 23222 0.68 0.423181
Target:  5'- gGCCUCCUCCucggucaccuccuCGCCCucggggGCCuCGGGGgcaucGCCg -3'
miRNA:   3'- -CGGGGGAGG-------------GCGGG------CGG-GCUCCa----UGG- -5'
29497 3' -65.2 NC_006151.1 + 49139 0.68 0.421535
Target:  5'- uGCCCgCgCCCGCCCacggcugccuggagGCCUGGGcGcGCCg -3'
miRNA:   3'- -CGGGgGaGGGCGGG--------------CGGGCUC-CaUGG- -5'
29497 3' -65.2 NC_006151.1 + 62705 0.68 0.419073
Target:  5'- uGUCCCCggUCCCGcCCCGCCgcccucgucccgcguUGAGGc-CCg -3'
miRNA:   3'- -CGGGGG--AGGGC-GGGCGG---------------GCUCCauGG- -5'
29497 3' -65.2 NC_006151.1 + 87367 0.68 0.415804
Target:  5'- gGCCCCCgUCgCGCacguccCCGCCC-AGGUGgucCCg -3'
miRNA:   3'- -CGGGGG-AGgGCG------GGCGGGcUCCAU---GG- -5'
29497 3' -65.2 NC_006151.1 + 43190 0.68 0.4077
Target:  5'- cGCCCCCa-CCGCCUGCaCCc-GGUuCCg -3'
miRNA:   3'- -CGGGGGagGGCGGGCG-GGcuCCAuGG- -5'
29497 3' -65.2 NC_006151.1 + 109117 0.68 0.4077
Target:  5'- aGCCgCCggcCCgCGCCCGCCgGccGGGcACCu -3'
miRNA:   3'- -CGGgGGa--GG-GCGGGCGGgC--UCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 109674 0.68 0.4077
Target:  5'- cGCCCCCUCagCCGCUauggGCgagCGAGGgagagGCCg -3'
miRNA:   3'- -CGGGGGAG--GGCGGg---CGg--GCUCCa----UGG- -5'
29497 3' -65.2 NC_006151.1 + 17297 0.68 0.4077
Target:  5'- gGCuCCCCgggcuucgagCCGUCCGCCgGGGGgcGCCg -3'
miRNA:   3'- -CG-GGGGag--------GGCGGGCGGgCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 2468 0.68 0.415804
Target:  5'- aGCCCCCagCgGUUgGCCgCGcGGUGCCc -3'
miRNA:   3'- -CGGGGGagGgCGGgCGG-GCuCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 27991 0.68 0.415804
Target:  5'- cGCCCaCUCCCGgcccacCCCGaCCGGGGgauCCc -3'
miRNA:   3'- -CGGGgGAGGGC------GGGCgGGCUCCau-GG- -5'
29497 3' -65.2 NC_006151.1 + 38330 0.69 0.353836
Target:  5'- cGCgCCCggCCUGCCCccgcucugGCCCGAGcaGCCc -3'
miRNA:   3'- -CGgGGGa-GGGCGGG--------CGGGCUCcaUGG- -5'
29497 3' -65.2 NC_006151.1 + 12819 0.69 0.361216
Target:  5'- cGUCCCCUCuccccgCCGCCC-CCCGcGGccacACCg -3'
miRNA:   3'- -CGGGGGAG------GGCGGGcGGGCuCCa---UGG- -5'
29497 3' -65.2 NC_006151.1 + 107615 0.69 0.361216
Target:  5'- cGCCgCCgCCCGCCaaGCCCGuGGagacgACCc -3'
miRNA:   3'- -CGGgGGaGGGCGGg-CGGGCuCCa----UGG- -5'
29497 3' -65.2 NC_006151.1 + 37925 0.69 0.368702
Target:  5'- cGCCgCCUUCgCCGCCgcgcaGCCCGGccGcGUGCCc -3'
miRNA:   3'- -CGG-GGGAG-GGCGGg----CGGGCU--C-CAUGG- -5'
29497 3' -65.2 NC_006151.1 + 56499 0.69 0.368702
Target:  5'- gGCCCCCcgggcCCCGCCCG-UCGuGGacGCCc -3'
miRNA:   3'- -CGGGGGa----GGGCGGGCgGGCuCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 8934 0.69 0.353836
Target:  5'- cGCCCCCgCCC-CCUGuCCCGGucccGGUcCCa -3'
miRNA:   3'- -CGGGGGaGGGcGGGC-GGGCU----CCAuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.