miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 3' -65.2 NC_006151.1 + 124664 0.73 0.190293
Target:  5'- uCCCCCUUCUacgGCCUGCgCGAGGggGCCc -3'
miRNA:   3'- cGGGGGAGGG---CGGGCGgGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 10855 0.73 0.190293
Target:  5'- uCCCCUUCCCcucgccccgGCCC-CCCGGcuuGGUGCCg -3'
miRNA:   3'- cGGGGGAGGG---------CGGGcGGGCU---CCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 137652 0.73 0.20402
Target:  5'- cGCCCCCgUCCCggcggacgagcGCCCGCCgUGcGGcUGCCg -3'
miRNA:   3'- -CGGGGG-AGGG-----------CGGGCGG-GCuCC-AUGG- -5'
29497 3' -65.2 NC_006151.1 + 108171 0.72 0.218598
Target:  5'- cCCCCCgcCCCGCCCGCCCcccc-ACCa -3'
miRNA:   3'- cGGGGGa-GGGCGGGCGGGcuccaUGG- -5'
29497 3' -65.2 NC_006151.1 + 10547 0.72 0.244866
Target:  5'- cGCCCCgUUCCGCCCggcGCCCaauGGcgcgGCCg -3'
miRNA:   3'- -CGGGGgAGGGCGGG---CGGGcu-CCa---UGG- -5'
29497 3' -65.2 NC_006151.1 + 78948 0.72 0.239411
Target:  5'- cGCgCgCgCCCGCCCGCCuCGGucucGGUGCCc -3'
miRNA:   3'- -CGgGgGaGGGCGGGCGG-GCU----CCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 12983 0.72 0.223652
Target:  5'- cCCaCCCUCCCGacucaCCCGuCCCGGGGgauuCCc -3'
miRNA:   3'- cGG-GGGAGGGC-----GGGC-GGGCUCCau--GG- -5'
29497 3' -65.2 NC_006151.1 + 2160 0.72 0.243219
Target:  5'- aGUCCCCgUCCuCGCCggggccggccccggCGCCCGAGGcccccgcggGCCg -3'
miRNA:   3'- -CGGGGG-AGG-GCGG--------------GCGGGCUCCa--------UGG- -5'
29497 3' -65.2 NC_006151.1 + 118324 0.72 0.232471
Target:  5'- uGCCCCCgagcagcgCCgCGCCCGCCCucucgcgcgccugcGAGGcgGCg -3'
miRNA:   3'- -CGGGGGa-------GG-GCGGGCGGG--------------CUCCa-UGg -5'
29497 3' -65.2 NC_006151.1 + 63339 0.72 0.234057
Target:  5'- gGCCUCCUCggCGCgCGCCCGcAGGU-CCu -3'
miRNA:   3'- -CGGGGGAGg-GCGgGCGGGC-UCCAuGG- -5'
29497 3' -65.2 NC_006151.1 + 87300 0.72 0.239411
Target:  5'- cGCCCCC-CUCGCCCGUggcgcaCGccGUGCCg -3'
miRNA:   3'- -CGGGGGaGGGCGGGCGg-----GCucCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 137267 0.72 0.234057
Target:  5'- cGCgCCCggugCCCGCgggcaCGCUCGAGGcgGCCa -3'
miRNA:   3'- -CGgGGGa---GGGCGg----GCGGGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 34075 0.72 0.218598
Target:  5'- cGCCCCCggggUCCCG---GCCCGAGGU-CCa -3'
miRNA:   3'- -CGGGGG----AGGGCgggCGGGCUCCAuGG- -5'
29497 3' -65.2 NC_006151.1 + 100557 0.71 0.285976
Target:  5'- cGCCgCCCUCacggCCGgCCGCCUGcAGGccGCCa -3'
miRNA:   3'- -CGG-GGGAG----GGCgGGCGGGC-UCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 9106 0.71 0.267132
Target:  5'- cGCCCCCgaCCCGCCucgcacuCGCCCGAcacucgGCCc -3'
miRNA:   3'- -CGGGGGa-GGGCGG-------GCGGGCUcca---UGG- -5'
29497 3' -65.2 NC_006151.1 + 125209 0.71 0.273702
Target:  5'- gGCCCCgCggccCCCGCggCCGCCCGucGGgcCCg -3'
miRNA:   3'- -CGGGG-Ga---GGGCG--GGCGGGCu-CCauGG- -5'
29497 3' -65.2 NC_006151.1 + 42567 0.71 0.248746
Target:  5'- cCCCCCUCuccggcgccacgcgCCGCCCGucCCCGAGagGCCu -3'
miRNA:   3'- cGGGGGAG--------------GGCGGGC--GGGCUCcaUGG- -5'
29497 3' -65.2 NC_006151.1 + 108319 0.71 0.250424
Target:  5'- cGCCCCCcgcgCCCggGCCCGCCCcaucgGCCa -3'
miRNA:   3'- -CGGGGGa---GGG--CGGGCGGGcuccaUGG- -5'
29497 3' -65.2 NC_006151.1 + 140022 0.71 0.273702
Target:  5'- gGCCgaCCUgCaCCGCCUGUuuGAGGUGCg -3'
miRNA:   3'- -CGGg-GGA-G-GGCGGGCGggCUCCAUGg -5'
29497 3' -65.2 NC_006151.1 + 32323 0.71 0.273702
Target:  5'- uCCUUCUCCgCGUCCccaucuccgagGCCCGAGGcGCCg -3'
miRNA:   3'- cGGGGGAGG-GCGGG-----------CGGGCUCCaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.