miRNA display CGI


Results 121 - 140 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 3' -65.2 NC_006151.1 + 39248 0.68 0.399696
Target:  5'- cGCCCCgacaUCggCCGCCucaaCGCCCagGGGGUGCUg -3'
miRNA:   3'- -CGGGGg---AG--GGCGG----GCGGG--CUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 61419 0.68 0.394942
Target:  5'- cGCCgUCCUCCucggccccgccgcggCGCCCGCCCGc-GUccGCCg -3'
miRNA:   3'- -CGG-GGGAGG---------------GCGGGCGGGCucCA--UGG- -5'
29497 3' -65.2 NC_006151.1 + 107558 0.68 0.391793
Target:  5'- cGCCgCCgCCCGCCaaGCCCGcGGaGCUg -3'
miRNA:   3'- -CGGgGGaGGGCGGg-CGGGCuCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 107972 0.68 0.4077
Target:  5'- gGCCCCC-CCUGCCCagaaGCCCccGGcgcaGCCc -3'
miRNA:   3'- -CGGGGGaGGGCGGG----CGGGcuCCa---UGG- -5'
29497 3' -65.2 NC_006151.1 + 108223 0.68 0.391793
Target:  5'- gGCCCgCCgcaCCGCCCGCCCcucc-ACCa -3'
miRNA:   3'- -CGGG-GGag-GGCGGGCGGGcuccaUGG- -5'
29497 3' -65.2 NC_006151.1 + 48844 0.68 0.383992
Target:  5'- gGCCCCCUCguggcgcgcgCUGCUggaGCCCGAGaucGCCa -3'
miRNA:   3'- -CGGGGGAG----------GGCGGg--CGGGCUCca-UGG- -5'
29497 3' -65.2 NC_006151.1 + 65904 0.68 0.383992
Target:  5'- cGCCUCCUCCCcCUCGUCCucgucGGGcGCCc -3'
miRNA:   3'- -CGGGGGAGGGcGGGCGGGc----UCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 101870 0.68 0.383992
Target:  5'- cGCaCCgCUCCCGCcgCCGCCgCG-GGU-CCa -3'
miRNA:   3'- -CG-GGgGAGGGCG--GGCGG-GCuCCAuGG- -5'
29497 3' -65.2 NC_006151.1 + 134406 0.68 0.389441
Target:  5'- aUCCCCUgCCCGCgCGagcuggugcugcccCCCGGGGgcGCCg -3'
miRNA:   3'- cGGGGGA-GGGCGgGC--------------GGGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 38022 0.68 0.391793
Target:  5'- uGCCCgCUCCggcugcccgCGCCCGCCCGc---GCCc -3'
miRNA:   3'- -CGGGgGAGG---------GCGGGCGGGCuccaUGG- -5'
29497 3' -65.2 NC_006151.1 + 56549 0.68 0.381672
Target:  5'- gGCCCCUgcucggCCUGCcgggcgacgcgccgCCGCCCGAcgggcuGGUGCg -3'
miRNA:   3'- -CGGGGGa-----GGGCG--------------GGCGGGCU------CCAUGg -5'
29497 3' -65.2 NC_006151.1 + 114658 0.67 0.466412
Target:  5'- cGCCCCC-CUCGCCCGUgagcgCCGcGaagGCCu -3'
miRNA:   3'- -CGGGGGaGGGCGGGCG-----GGCuCca-UGG- -5'
29497 3' -65.2 NC_006151.1 + 84180 0.67 0.466412
Target:  5'- cGCCUCCUCgCCGCCgccgUGCCCccgggcggcGAGGagAUCa -3'
miRNA:   3'- -CGGGGGAG-GGCGG----GCGGG---------CUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 59755 0.67 0.466412
Target:  5'- aGCUCCUgcagCUCGUCCucgggcacgucgGCCaCGAGGUACUu -3'
miRNA:   3'- -CGGGGGa---GGGCGGG------------CGG-GCUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 49044 0.67 0.466412
Target:  5'- gGCCCacgggcuggCCUUCagCGUCCGgCgCGGGGUGCCg -3'
miRNA:   3'- -CGGG---------GGAGG--GCGGGCgG-GCUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 5352 0.67 0.466412
Target:  5'- cGCCCUCUCCgGCgCgGCgCCGGcGGgGCUg -3'
miRNA:   3'- -CGGGGGAGGgCG-GgCG-GGCU-CCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 44105 0.67 0.466412
Target:  5'- aGCgCCCaUCCCcaucaaCCC-CCCGGGGgcgGCCa -3'
miRNA:   3'- -CGgGGG-AGGGc-----GGGcGGGCUCCa--UGG- -5'
29497 3' -65.2 NC_006151.1 + 76225 0.67 0.465542
Target:  5'- uGCCgUCgagguUCUCGCCCgagaugaGCCCGAGG-GCCu -3'
miRNA:   3'- -CGGgGG-----AGGGCGGG-------CGGGCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 30917 0.67 0.457752
Target:  5'- cGCCCgCgggcggCCCGCgcggaUCGCCCGcgcGGUAUCg -3'
miRNA:   3'- -CGGGgGa-----GGGCG-----GGCGGGCu--CCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 129519 0.67 0.475156
Target:  5'- aGCCgCUUgCCGCCgacggggggGCCCGGGGccGCCg -3'
miRNA:   3'- -CGGgGGAgGGCGGg--------CGGGCUCCa-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.