miRNA display CGI


Results 141 - 160 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 3' -65.2 NC_006151.1 + 13723 0.67 0.483981
Target:  5'- uCCCCCauuggccggUCCCggacGCCCGuCCCGcGGgccggACCg -3'
miRNA:   3'- cGGGGG---------AGGG----CGGGC-GGGCuCCa----UGG- -5'
29497 3' -65.2 NC_006151.1 + 30729 0.67 0.483981
Target:  5'- aCCCUCUCaCGCggGCCCGGaGUGCCg -3'
miRNA:   3'- cGGGGGAGgGCGggCGGGCUcCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 37008 0.67 0.483981
Target:  5'- cGCCCCCcgggccCCCGCcgCCGCCgCGcGGcgcucgGCCu -3'
miRNA:   3'- -CGGGGGa-----GGGCG--GGCGG-GCuCCa-----UGG- -5'
29497 3' -65.2 NC_006151.1 + 117013 0.67 0.432304
Target:  5'- cGCgCUCC-CCCGCggGCCCGGgccgcaggcGGUACCa -3'
miRNA:   3'- -CG-GGGGaGGGCGggCGGGCU---------CCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 37319 0.67 0.487533
Target:  5'- gGCCCCCgccgaccgacgggCCGCugcucaccCCGCUCGGGGaGCCc -3'
miRNA:   3'- -CGGGGGag-----------GGCG--------GGCGGGCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 135057 0.67 0.475156
Target:  5'- uCCCCCUCCuCGucuuccCCCGCCuccucgggCGGGGgcggcgggGCCg -3'
miRNA:   3'- cGGGGGAGG-GC------GGGCGG--------GCUCCa-------UGG- -5'
29497 3' -65.2 NC_006151.1 + 129519 0.67 0.475156
Target:  5'- aGCCgCUUgCCGCCgacggggggGCCCGGGGccGCCg -3'
miRNA:   3'- -CGGgGGAgGGCGGg--------CGGGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 139595 0.67 0.432304
Target:  5'- cGCCCCC-CCgagcggcgGCCCGUCCGGGcGcgGCUg -3'
miRNA:   3'- -CGGGGGaGGg-------CGGGCGGGCUC-Ca-UGG- -5'
29497 3' -65.2 NC_006151.1 + 31603 0.67 0.432304
Target:  5'- cGCUCCCcCgCCGCCUGggCGGGGaUGCCg -3'
miRNA:   3'- -CGGGGGaG-GGCGGGCggGCUCC-AUGG- -5'
29497 3' -65.2 NC_006151.1 + 38579 0.67 0.432304
Target:  5'- cGCgCCCggggCCCGCCgC-CCCGGGG-ACg -3'
miRNA:   3'- -CGgGGGa---GGGCGG-GcGGGCUCCaUGg -5'
29497 3' -65.2 NC_006151.1 + 71430 0.67 0.432304
Target:  5'- cCCCCCUCCCGgggccaCCCGCCCccccu-CCu -3'
miRNA:   3'- cGGGGGAGGGC------GGGCGGGcuccauGG- -5'
29497 3' -65.2 NC_006151.1 + 30917 0.67 0.457752
Target:  5'- cGCCCgCgggcggCCCGCgcggaUCGCCCGcgcGGUAUCg -3'
miRNA:   3'- -CGGGgGa-----GGGCG-----GGCGGGCu--CCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 76225 0.67 0.465542
Target:  5'- uGCCgUCgagguUCUCGCCCgagaugaGCCCGAGG-GCCu -3'
miRNA:   3'- -CGGgGG-----AGGGCGGG-------CGGGCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 12661 0.67 0.432304
Target:  5'- aGCCCCCg-CCGCCgCGgCCGcAGccGCCg -3'
miRNA:   3'- -CGGGGGagGGCGG-GCgGGC-UCcaUGG- -5'
29497 3' -65.2 NC_006151.1 + 5352 0.67 0.466412
Target:  5'- cGCCCUCUCCgGCgCgGCgCCGGcGGgGCUg -3'
miRNA:   3'- -CGGGGGAGGgCG-GgCG-GGCU-CCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 7019 0.67 0.466412
Target:  5'- gGCCCCCgcggcggccaUCUCgGCUCGCCCGG---GCCa -3'
miRNA:   3'- -CGGGGG----------AGGG-CGGGCGGGCUccaUGG- -5'
29497 3' -65.2 NC_006151.1 + 49044 0.67 0.466412
Target:  5'- gGCCCacgggcuggCCUUCagCGUCCGgCgCGGGGUGCCg -3'
miRNA:   3'- -CGGG---------GGAGG--GCGGGCgG-GCUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 59755 0.67 0.466412
Target:  5'- aGCUCCUgcagCUCGUCCucgggcacgucgGCCaCGAGGUACUu -3'
miRNA:   3'- -CGGGGGa---GGGCGGG------------CGG-GCUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 84180 0.67 0.466412
Target:  5'- cGCCUCCUCgCCGCCgccgUGCCCccgggcggcGAGGagAUCa -3'
miRNA:   3'- -CGGGGGAG-GGCGG----GCGGG---------CUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 114658 0.67 0.466412
Target:  5'- cGCCCCC-CUCGCCCGUgagcgCCGcGaagGCCu -3'
miRNA:   3'- -CGGGGGaGGGCGGGCG-----GGCuCca-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.