Results 101 - 120 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29497 | 3' | -65.2 | NC_006151.1 | + | 56499 | 0.69 | 0.368702 |
Target: 5'- gGCCCCCcgggcCCCGCCCG-UCGuGGacGCCc -3' miRNA: 3'- -CGGGGGa----GGGCGGGCgGGCuCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 56549 | 0.68 | 0.381672 |
Target: 5'- gGCCCCUgcucggCCUGCcgggcgacgcgccgCCGCCCGAcgggcuGGUGCg -3' miRNA: 3'- -CGGGGGa-----GGGCG--------------GGCGGGCU------CCAUGg -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 48844 | 0.68 | 0.383992 |
Target: 5'- gGCCCCCUCguggcgcgcgCUGCUggaGCCCGAGaucGCCa -3' miRNA: 3'- -CGGGGGAG----------GGCGGg--CGGGCUCca-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 65904 | 0.68 | 0.383992 |
Target: 5'- cGCCUCCUCCCcCUCGUCCucgucGGGcGCCc -3' miRNA: 3'- -CGGGGGAGGGcGGGCGGGc----UCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 101870 | 0.68 | 0.383992 |
Target: 5'- cGCaCCgCUCCCGCcgCCGCCgCG-GGU-CCa -3' miRNA: 3'- -CG-GGgGAGGGCG--GGCGG-GCuCCAuGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 134406 | 0.68 | 0.389441 |
Target: 5'- aUCCCCUgCCCGCgCGagcuggugcugcccCCCGGGGgcGCCg -3' miRNA: 3'- cGGGGGA-GGGCGgGC--------------GGGCUCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 107558 | 0.68 | 0.391793 |
Target: 5'- cGCCgCCgCCCGCCaaGCCCGcGGaGCUg -3' miRNA: 3'- -CGGgGGaGGGCGGg-CGGGCuCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 86310 | 0.68 | 0.391793 |
Target: 5'- uGCCCgcagcugggggCCgugCUCGCCCGCgCCGuGGgcCCg -3' miRNA: 3'- -CGGG-----------GGa--GGGCGGGCG-GGCuCCauGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 108223 | 0.68 | 0.391793 |
Target: 5'- gGCCCgCCgcaCCGCCCGCCCcucc-ACCa -3' miRNA: 3'- -CGGG-GGag-GGCGGGCGGGcuccaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 38022 | 0.68 | 0.391793 |
Target: 5'- uGCCCgCUCCggcugcccgCGCCCGCCCGc---GCCc -3' miRNA: 3'- -CGGGgGAGG---------GCGGGCGGGCuccaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 61419 | 0.68 | 0.394942 |
Target: 5'- cGCCgUCCUCCucggccccgccgcggCGCCCGCCCGc-GUccGCCg -3' miRNA: 3'- -CGG-GGGAGG---------------GCGGGCGGGCucCA--UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 56627 | 0.68 | 0.399696 |
Target: 5'- cGCCCCUgcgCaCGCCCGagauggCCGAGGccgugUACCg -3' miRNA: 3'- -CGGGGGa--GgGCGGGCg-----GGCUCC-----AUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 131607 | 0.68 | 0.399696 |
Target: 5'- cCCCCCUCCgGgCCgGCCCGcGGcuuuauacGCCc -3' miRNA: 3'- cGGGGGAGGgC-GGgCGGGCuCCa-------UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 39248 | 0.68 | 0.399696 |
Target: 5'- cGCCCCgacaUCggCCGCCucaaCGCCCagGGGGUGCUg -3' miRNA: 3'- -CGGGGg---AG--GGCGG----GCGGG--CUCCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 36885 | 0.68 | 0.406895 |
Target: 5'- cGCCCCCgcagagacagcCCCGCCggcgccgCGCCggaGAGGcGCCc -3' miRNA: 3'- -CGGGGGa----------GGGCGG-------GCGGg--CUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 109674 | 0.68 | 0.4077 |
Target: 5'- cGCCCCCUCagCCGCUauggGCgagCGAGGgagagGCCg -3' miRNA: 3'- -CGGGGGAG--GGCGGg---CGg--GCUCCa----UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 107972 | 0.68 | 0.4077 |
Target: 5'- gGCCCCC-CCUGCCCagaaGCCCccGGcgcaGCCc -3' miRNA: 3'- -CGGGGGaGGGCGGG----CGGGcuCCa---UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 43190 | 0.68 | 0.4077 |
Target: 5'- cGCCCCCa-CCGCCUGCaCCc-GGUuCCg -3' miRNA: 3'- -CGGGGGagGGCGGGCG-GGcuCCAuGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 109117 | 0.68 | 0.4077 |
Target: 5'- aGCCgCCggcCCgCGCCCGCCgGccGGGcACCu -3' miRNA: 3'- -CGGgGGa--GG-GCGGGCGGgC--UCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 17297 | 0.68 | 0.4077 |
Target: 5'- gGCuCCCCgggcuucgagCCGUCCGCCgGGGGgcGCCg -3' miRNA: 3'- -CG-GGGGag--------GGCGGGCGGgCUCCa-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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