miRNA display CGI


Results 121 - 140 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 3' -65.2 NC_006151.1 + 43190 0.68 0.4077
Target:  5'- cGCCCCCa-CCGCCUGCaCCc-GGUuCCg -3'
miRNA:   3'- -CGGGGGagGGCGGGCG-GGcuCCAuGG- -5'
29497 3' -65.2 NC_006151.1 + 2468 0.68 0.415804
Target:  5'- aGCCCCCagCgGUUgGCCgCGcGGUGCCc -3'
miRNA:   3'- -CGGGGGagGgCGGgCGG-GCuCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 27991 0.68 0.415804
Target:  5'- cGCCCaCUCCCGgcccacCCCGaCCGGGGgauCCc -3'
miRNA:   3'- -CGGGgGAGGGC------GGGCgGGCUCCau-GG- -5'
29497 3' -65.2 NC_006151.1 + 87367 0.68 0.415804
Target:  5'- gGCCCCCgUCgCGCacguccCCGCCC-AGGUGgucCCg -3'
miRNA:   3'- -CGGGGG-AGgGCG------GGCGGGcUCCAU---GG- -5'
29497 3' -65.2 NC_006151.1 + 62705 0.68 0.419073
Target:  5'- uGUCCCCggUCCCGcCCCGCCgcccucgucccgcguUGAGGc-CCg -3'
miRNA:   3'- -CGGGGG--AGGGC-GGGCGG---------------GCUCCauGG- -5'
29497 3' -65.2 NC_006151.1 + 49139 0.68 0.421535
Target:  5'- uGCCCgCgCCCGCCCacggcugccuggagGCCUGGGcGcGCCg -3'
miRNA:   3'- -CGGGgGaGGGCGGG--------------CGGGCUC-CaUGG- -5'
29497 3' -65.2 NC_006151.1 + 23222 0.68 0.423181
Target:  5'- gGCCUCCUCCucggucaccuccuCGCCCucggggGCCuCGGGGgcaucGCCg -3'
miRNA:   3'- -CGGGGGAGG-------------GCGGG------CGG-GCUCCa----UGG- -5'
29497 3' -65.2 NC_006151.1 + 48218 0.68 0.424006
Target:  5'- cGCCCCCcaCCCGCgcuccCCGgCgCGAGGaGCUg -3'
miRNA:   3'- -CGGGGGa-GGGCG-----GGCgG-GCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 101929 0.68 0.424006
Target:  5'- gGCCCCCguggCCgGCgaGCCagGAGG-ACCu -3'
miRNA:   3'- -CGGGGGa---GGgCGggCGGg-CUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 81686 0.68 0.424006
Target:  5'- cGCCUCggCgacggUCGCCCGCgCGAGGUccaGCCg -3'
miRNA:   3'- -CGGGGgaG-----GGCGGGCGgGCUCCA---UGG- -5'
29497 3' -65.2 NC_006151.1 + 56430 0.68 0.424006
Target:  5'- gGCCCaCCUCa-GCCCGCUCGAcgagacgcGcGUGCUg -3'
miRNA:   3'- -CGGG-GGAGggCGGGCGGGCU--------C-CAUGG- -5'
29497 3' -65.2 NC_006151.1 + 96375 0.67 0.432304
Target:  5'- gGCCgCCUCCaCGCgCGCgC--GGUGCCg -3'
miRNA:   3'- -CGGgGGAGG-GCGgGCGgGcuCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 139595 0.67 0.432304
Target:  5'- cGCCCCC-CCgagcggcgGCCCGUCCGGGcGcgGCUg -3'
miRNA:   3'- -CGGGGGaGGg-------CGGGCGGGCUC-Ca-UGG- -5'
29497 3' -65.2 NC_006151.1 + 117013 0.67 0.432304
Target:  5'- cGCgCUCC-CCCGCggGCCCGGgccgcaggcGGUACCa -3'
miRNA:   3'- -CG-GGGGaGGGCGggCGGGCU---------CCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 31603 0.67 0.432304
Target:  5'- cGCUCCCcCgCCGCCUGggCGGGGaUGCCg -3'
miRNA:   3'- -CGGGGGaG-GGCGGGCggGCUCC-AUGG- -5'
29497 3' -65.2 NC_006151.1 + 12661 0.67 0.432304
Target:  5'- aGCCCCCg-CCGCCgCGgCCGcAGccGCCg -3'
miRNA:   3'- -CGGGGGagGGCGG-GCgGGC-UCcaUGG- -5'
29497 3' -65.2 NC_006151.1 + 38579 0.67 0.432304
Target:  5'- cGCgCCCggggCCCGCCgC-CCCGGGG-ACg -3'
miRNA:   3'- -CGgGGGa---GGGCGG-GcGGGCUCCaUGg -5'
29497 3' -65.2 NC_006151.1 + 71430 0.67 0.432304
Target:  5'- cCCCCCUCCCGgggccaCCCGCCCccccu-CCu -3'
miRNA:   3'- cGGGGGAGGGC------GGGCGGGcuccauGG- -5'
29497 3' -65.2 NC_006151.1 + 5607 0.67 0.439852
Target:  5'- gGUCCCCUCCgGCggagggggcgccgCCGCCgCcGGGcGCCg -3'
miRNA:   3'- -CGGGGGAGGgCG-------------GGCGG-GcUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 82546 0.67 0.439852
Target:  5'- cGCCCCCagCCCGCCgaGCUgGAagacgaaccacgcGGaGCCg -3'
miRNA:   3'- -CGGGGGa-GGGCGGg-CGGgCU-------------CCaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.