Results 141 - 160 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29497 | 3' | -65.2 | NC_006151.1 | + | 62035 | 0.67 | 0.440696 |
Target: 5'- aGCCCCC-CgCUGCgCCGCgUGGcGGUGCa -3' miRNA: 3'- -CGGGGGaG-GGCG-GGCGgGCU-CCAUGg -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 31912 | 0.67 | 0.440696 |
Target: 5'- cUCCCCUCCCGCgucCUGCgucacgggaCCGGGGgguCCc -3' miRNA: 3'- cGGGGGAGGGCG---GGCG---------GGCUCCau-GG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 114254 | 0.67 | 0.449179 |
Target: 5'- -aCCCCUCggaGCgCGCCCucgagGAGGUGCUc -3' miRNA: 3'- cgGGGGAGgg-CGgGCGGG-----CUCCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 32643 | 0.67 | 0.449179 |
Target: 5'- cCCCCCUCgCCGCCgGCCCcuucc-CCg -3' miRNA: 3'- cGGGGGAG-GGCGGgCGGGcuccauGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 104241 | 0.67 | 0.449179 |
Target: 5'- cGCCUUCaaCCCGCaCCuGCCCGAGaacGCCg -3' miRNA: 3'- -CGGGGGa-GGGCG-GG-CGGGCUCca-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 59838 | 0.67 | 0.449179 |
Target: 5'- gGCCgCCaCCgGCCgGUCCGGGGggcgcagcUGCCg -3' miRNA: 3'- -CGGgGGaGGgCGGgCGGGCUCC--------AUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 107885 | 0.67 | 0.449179 |
Target: 5'- gGCCCCCcaggCCCagccGCCCGCCgCGGccaaGCCg -3' miRNA: 3'- -CGGGGGa---GGG----CGGGCGG-GCUcca-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 16894 | 0.67 | 0.449179 |
Target: 5'- cGCgUCCguugCCgCGCCCGCCCc-GGcGCCg -3' miRNA: 3'- -CGgGGGa---GG-GCGGGCGGGcuCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 14140 | 0.67 | 0.452598 |
Target: 5'- cGCgCCCCgagccgacgaggagCCgCGcCCCGCUCGAGGacGCCc -3' miRNA: 3'- -CG-GGGGa-------------GG-GC-GGGCGGGCUCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 21454 | 0.67 | 0.456891 |
Target: 5'- gGCCCCCggcggcguggUCCCGCgUCGCCgGcucgggcAGGcgGCCg -3' miRNA: 3'- -CGGGGG----------AGGGCG-GGCGGgC-------UCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 132999 | 0.67 | 0.457752 |
Target: 5'- -aCUuuUCCCuUCCGCCCGgGGGUGCUc -3' miRNA: 3'- cgGGggAGGGcGGGCGGGC-UCCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 30917 | 0.67 | 0.457752 |
Target: 5'- cGCCCgCgggcggCCCGCgcggaUCGCCCGcgcGGUAUCg -3' miRNA: 3'- -CGGGgGa-----GGGCG-----GGCGGGCu--CCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 38523 | 0.67 | 0.457752 |
Target: 5'- aGCUCCCcCgCCGCCgGCCCGG---ACCc -3' miRNA: 3'- -CGGGGGaG-GGCGGgCGGGCUccaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 76225 | 0.67 | 0.465542 |
Target: 5'- uGCCgUCgagguUCUCGCCCgagaugaGCCCGAGG-GCCu -3' miRNA: 3'- -CGGgGG-----AGGGCGGG-------CGGGCUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 5352 | 0.67 | 0.466412 |
Target: 5'- cGCCCUCUCCgGCgCgGCgCCGGcGGgGCUg -3' miRNA: 3'- -CGGGGGAGGgCG-GgCG-GGCU-CCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 7019 | 0.67 | 0.466412 |
Target: 5'- gGCCCCCgcggcggccaUCUCgGCUCGCCCGG---GCCa -3' miRNA: 3'- -CGGGGG----------AGGG-CGGGCGGGCUccaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 49044 | 0.67 | 0.466412 |
Target: 5'- gGCCCacgggcuggCCUUCagCGUCCGgCgCGGGGUGCCg -3' miRNA: 3'- -CGGG---------GGAGG--GCGGGCgG-GCUCCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 59755 | 0.67 | 0.466412 |
Target: 5'- aGCUCCUgcagCUCGUCCucgggcacgucgGCCaCGAGGUACUu -3' miRNA: 3'- -CGGGGGa---GGGCGGG------------CGG-GCUCCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 84180 | 0.67 | 0.466412 |
Target: 5'- cGCCUCCUCgCCGCCgccgUGCCCccgggcggcGAGGagAUCa -3' miRNA: 3'- -CGGGGGAG-GGCGG----GCGGG---------CUCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 114658 | 0.67 | 0.466412 |
Target: 5'- cGCCCCC-CUCGCCCGUgagcgCCGcGaagGCCu -3' miRNA: 3'- -CGGGGGaGGGCGGGCG-----GGCuCca-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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