Results 121 - 140 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29497 | 3' | -65.2 | NC_006151.1 | + | 8934 | 0.69 | 0.353836 |
Target: 5'- cGCCCCCgCCC-CCUGuCCCGGucccGGUcCCa -3' miRNA: 3'- -CGGGGGaGGGcGGGC-GGGCU----CCAuGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 107681 | 0.69 | 0.353103 |
Target: 5'- gGCCCCC-CgCCGCCCacaagaaGCCCGccgccGGcACCa -3' miRNA: 3'- -CGGGGGaG-GGCGGG-------CGGGCu----CCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 68812 | 0.69 | 0.353103 |
Target: 5'- gGCCCgagucgaccaUCUCCCGCgCCggcguguGCUCGAGGcGCCg -3' miRNA: 3'- -CGGG----------GGAGGGCG-GG-------CGGGCUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 55955 | 0.69 | 0.347285 |
Target: 5'- gGCaCgCCCUCCCGCggcuggugugcgaggUGCgCGAGGUGCCc -3' miRNA: 3'- -CG-G-GGGAGGGCGg--------------GCGgGCUCCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 32765 | 0.69 | 0.346563 |
Target: 5'- cGCCCCgcuCUCCCacGCCgCgGCCgCGGGGgGCCg -3' miRNA: 3'- -CGGGG---GAGGG--CGG-G-CGG-GCUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 38121 | 0.69 | 0.346563 |
Target: 5'- aUCCCCggggCCgGCCCGgCCGAGcGgcggcagGCCg -3' miRNA: 3'- cGGGGGa---GGgCGGGCgGGCUC-Ca------UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 87540 | 0.69 | 0.346563 |
Target: 5'- cCCCCCagCCGCCCGUCC-AGG--CCu -3' miRNA: 3'- cGGGGGagGGCGGGCGGGcUCCauGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 24854 | 0.69 | 0.344402 |
Target: 5'- gGCCCaCCUucagcaccaccgugUCCGCCuCGCCCGGccGGcggGCCa -3' miRNA: 3'- -CGGG-GGA--------------GGGCGG-GCGGGCU--CCa--UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 28317 | 0.69 | 0.339397 |
Target: 5'- cGUCCCCggggCGCCCGCCCccGGGGUucgauCCc -3' miRNA: 3'- -CGGGGGagg-GCGGGCGGG--CUCCAu----GG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 25446 | 0.69 | 0.339397 |
Target: 5'- cUCCCCgcggCCGCCCGCCCcccccuGGcGCCa -3' miRNA: 3'- cGGGGGag--GGCGGGCGGGcu----CCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 14875 | 0.69 | 0.339397 |
Target: 5'- uGCCCUC-CCCGCCguucuCGCCCGucG-ACCc -3' miRNA: 3'- -CGGGGGaGGGCGG-----GCGGGCucCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 35209 | 0.69 | 0.33234 |
Target: 5'- cGCCUCCgCgCGCCCauugGCCCGGGcGaGCCg -3' miRNA: 3'- -CGGGGGaGgGCGGG----CGGGCUC-CaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 90613 | 0.69 | 0.33234 |
Target: 5'- gGCCCCCUUCC-CCCgaggcgGCCCGcGGGcGCUu -3' miRNA: 3'- -CGGGGGAGGGcGGG------CGGGC-UCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 14811 | 0.69 | 0.33234 |
Target: 5'- cGCCCCCgacccaccgcgUCCGCCgCGCCCauGG-ACCg -3' miRNA: 3'- -CGGGGGa----------GGGCGG-GCGGGcuCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 101810 | 0.7 | 0.325391 |
Target: 5'- cGCCCCCgucCCCGCCgucCCCGucucGGcgGCCg -3' miRNA: 3'- -CGGGGGa--GGGCGGgc-GGGCu---CCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 37239 | 0.7 | 0.325391 |
Target: 5'- gGCCCCggCCCcggaGCCCGCCCGgcccccgcgcAGGaagcGCCg -3' miRNA: 3'- -CGGGGgaGGG----CGGGCGGGC----------UCCa---UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 108919 | 0.7 | 0.321274 |
Target: 5'- gGCCCCgCgccagaccgggggucUUCCGCCCGCggcucaacCCGAGG-GCCg -3' miRNA: 3'- -CGGGG-G---------------AGGGCGGGCG--------GGCUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 36702 | 0.7 | 0.318551 |
Target: 5'- aGCCCCUgcucgacgagCCCG-CCGCCgCGAGGcgGCUc -3' miRNA: 3'- -CGGGGGa---------GGGCgGGCGG-GCUCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 32890 | 0.7 | 0.318551 |
Target: 5'- gGCCCCCUCCUG-UCGCCUGucGUuggaaugaaACCu -3' miRNA: 3'- -CGGGGGAGGGCgGGCGGGCucCA---------UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 34113 | 0.7 | 0.30454 |
Target: 5'- cGCCCCUUugcaCCCGCCCcCCCaccgggcGGGGU-CCg -3' miRNA: 3'- -CGGGGGA----GGGCGGGcGGG-------CUCCAuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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