Results 61 - 80 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29497 | 3' | -65.2 | NC_006151.1 | + | 86981 | 0.66 | 0.510909 |
Target: 5'- cGCCaCCgccgCUCGCCCucGCCCGAGccccgGCCc -3' miRNA: 3'- -CGGgGGa---GGGCGGG--CGGGCUCca---UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 86310 | 0.68 | 0.391793 |
Target: 5'- uGCCCgcagcugggggCCgugCUCGCCCGCgCCGuGGgcCCg -3' miRNA: 3'- -CGGG-----------GGa--GGGCGGGCG-GGCuCCauGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 84531 | 0.73 | 0.1846 |
Target: 5'- cGCCCCCguUCCCcgugggcuucuggGCCCGCCCGGGcuucagcgaggGCCu -3' miRNA: 3'- -CGGGGG--AGGG-------------CGGGCGGGCUCca---------UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 84180 | 0.67 | 0.466412 |
Target: 5'- cGCCUCCUCgCCGCCgccgUGCCCccgggcggcGAGGagAUCa -3' miRNA: 3'- -CGGGGGAG-GGCGG----GCGGG---------CUCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 82546 | 0.67 | 0.439852 |
Target: 5'- cGCCCCCagCCCGCCgaGCUgGAagacgaaccacgcGGaGCCg -3' miRNA: 3'- -CGGGGGa-GGGCGGg-CGGgCU-------------CCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 81686 | 0.68 | 0.424006 |
Target: 5'- cGCCUCggCgacggUCGCCCGCgCGAGGUccaGCCg -3' miRNA: 3'- -CGGGGgaG-----GGCGGGCGgGCUCCA---UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 81332 | 0.82 | 0.050619 |
Target: 5'- cGCCCCCUCguccgucgccgCCGCCgCGCCCGGGGccCCg -3' miRNA: 3'- -CGGGGGAG-----------GGCGG-GCGGGCUCCauGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 80611 | 0.66 | 0.529202 |
Target: 5'- cCCCCCUCCCGUCU-CCCGucucuCCc -3' miRNA: 3'- cGGGGGAGGGCGGGcGGGCuccauGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 78948 | 0.72 | 0.239411 |
Target: 5'- cGCgCgCgCCCGCCCGCCuCGGucucGGUGCCc -3' miRNA: 3'- -CGgGgGaGGGCGGGCGG-GCU----CCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 76225 | 0.67 | 0.465542 |
Target: 5'- uGCCgUCgagguUCUCGCCCgagaugaGCCCGAGG-GCCu -3' miRNA: 3'- -CGGgGG-----AGGGCGGG-------CGGGCUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 74166 | 0.73 | 0.190293 |
Target: 5'- uGCCCaCCUCCuCGUCCGUCUcGGGcACCa -3' miRNA: 3'- -CGGG-GGAGG-GCGGGCGGGcUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 71430 | 0.67 | 0.432304 |
Target: 5'- cCCCCCUCCCGgggccaCCCGCCCccccu-CCu -3' miRNA: 3'- cGGGGGAGGGC------GGGCGGGcuccauGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 69510 | 0.73 | 0.199352 |
Target: 5'- cGCCUCCUCCgccgcCGCgCCGCgCGAGGgcGCCc -3' miRNA: 3'- -CGGGGGAGG-----GCG-GGCGgGCUCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 68812 | 0.69 | 0.353103 |
Target: 5'- gGCCCgagucgaccaUCUCCCGCgCCggcguguGCUCGAGGcGCCg -3' miRNA: 3'- -CGGG----------GGAGGGCG-GG-------CGGGCUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 67692 | 0.66 | 0.53844 |
Target: 5'- cGCgCagCUCCCGCuuGUCCGccuGGcGCCa -3' miRNA: 3'- -CGgGg-GAGGGCGggCGGGCu--CCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 66021 | 0.74 | 0.169215 |
Target: 5'- cGCCUCCgcaaagUCCGCCCGCgUGAaccgccGGUGCCu -3' miRNA: 3'- -CGGGGGa-----GGGCGGGCGgGCU------CCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 65904 | 0.68 | 0.383992 |
Target: 5'- cGCCUCCUCCCcCUCGUCCucgucGGGcGCCc -3' miRNA: 3'- -CGGGGGAGGGcGGGCGGGc----UCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 64180 | 0.73 | 0.208303 |
Target: 5'- cGCCCCCgUCgCCGCCCGCgaucgccCCGggcAGGU-CCg -3' miRNA: 3'- -CGGGGG-AG-GGCGGGCG-------GGC---UCCAuGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 63830 | 0.67 | 0.48221 |
Target: 5'- cGCCCUcgaagaaCUCCaCGCCCGgCCGGGcgauggaGUACa -3' miRNA: 3'- -CGGGG-------GAGG-GCGGGCgGGCUC-------CAUGg -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 63610 | 0.71 | 0.285976 |
Target: 5'- gGCaCCCUCagcgcgCGCUCGCCCGAGGc-CCa -3' miRNA: 3'- -CGgGGGAGg-----GCGGGCGGGCUCCauGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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