miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 3' -65.2 NC_006151.1 + 63339 0.72 0.234057
Target:  5'- gGCCUCCUCggCGCgCGCCCGcAGGU-CCu -3'
miRNA:   3'- -CGGGGGAGg-GCGgGCGGGC-UCCAuGG- -5'
29497 3' -65.2 NC_006151.1 + 62705 0.68 0.419073
Target:  5'- uGUCCCCggUCCCGcCCCGCCgcccucgucccgcguUGAGGc-CCg -3'
miRNA:   3'- -CGGGGG--AGGGC-GGGCGG---------------GCUCCauGG- -5'
29497 3' -65.2 NC_006151.1 + 62451 0.67 0.483981
Target:  5'- cGCCUgCaucgCCCaCCgCGCCCGGGGcaGCCg -3'
miRNA:   3'- -CGGGgGa---GGGcGG-GCGGGCUCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 62035 0.67 0.440696
Target:  5'- aGCCCCC-CgCUGCgCCGCgUGGcGGUGCa -3'
miRNA:   3'- -CGGGGGaG-GGCG-GGCGgGCU-CCAUGg -5'
29497 3' -65.2 NC_006151.1 + 61419 0.68 0.394942
Target:  5'- cGCCgUCCUCCucggccccgccgcggCGCCCGCCCGc-GUccGCCg -3'
miRNA:   3'- -CGG-GGGAGG---------------GCGGGCGGGCucCA--UGG- -5'
29497 3' -65.2 NC_006151.1 + 60700 0.81 0.051915
Target:  5'- cGCCCgCCgcgCCCGCCgCGaccucggcCCCGAGGUGCCg -3'
miRNA:   3'- -CGGG-GGa--GGGCGG-GC--------GGGCUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 59838 0.67 0.449179
Target:  5'- gGCCgCCaCCgGCCgGUCCGGGGggcgcagcUGCCg -3'
miRNA:   3'- -CGGgGGaGGgCGGgCGGGCUCC--------AUGG- -5'
29497 3' -65.2 NC_006151.1 + 59755 0.67 0.466412
Target:  5'- aGCUCCUgcagCUCGUCCucgggcacgucgGCCaCGAGGUACUu -3'
miRNA:   3'- -CGGGGGa---GGGCGGG------------CGG-GCUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 59327 0.73 0.192972
Target:  5'- cGCCCCCgCCCGCCCccagcgcgcucaggGCCgcgcgcaCGGGGcGCCg -3'
miRNA:   3'- -CGGGGGaGGGCGGG--------------CGG-------GCUCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 58244 0.66 0.520024
Target:  5'- cGCCgCCaCgCGCCgGCCCGcGG-GCCg -3'
miRNA:   3'- -CGGgGGaGgGCGGgCGGGCuCCaUGG- -5'
29497 3' -65.2 NC_006151.1 + 57453 0.66 0.501861
Target:  5'- gGCCCCCg--CGUCgGCC--AGGUGCCg -3'
miRNA:   3'- -CGGGGGaggGCGGgCGGgcUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 56627 0.68 0.399696
Target:  5'- cGCCCCUgcgCaCGCCCGagauggCCGAGGccgugUACCg -3'
miRNA:   3'- -CGGGGGa--GgGCGGGCg-----GGCUCC-----AUGG- -5'
29497 3' -65.2 NC_006151.1 + 56549 0.68 0.381672
Target:  5'- gGCCCCUgcucggCCUGCcgggcgacgcgccgCCGCCCGAcgggcuGGUGCg -3'
miRNA:   3'- -CGGGGGa-----GGGCG--------------GGCGGGCU------CCAUGg -5'
29497 3' -65.2 NC_006151.1 + 56499 0.69 0.368702
Target:  5'- gGCCCCCcgggcCCCGCCCG-UCGuGGacGCCc -3'
miRNA:   3'- -CGGGGGa----GGGCGGGCgGGCuCCa-UGG- -5'
29497 3' -65.2 NC_006151.1 + 56430 0.68 0.424006
Target:  5'- gGCCCaCCUCa-GCCCGCUCGAcgagacgcGcGUGCUg -3'
miRNA:   3'- -CGGG-GGAGggCGGGCGGGCU--------C-CAUGG- -5'
29497 3' -65.2 NC_006151.1 + 55955 0.69 0.347285
Target:  5'- gGCaCgCCCUCCCGCggcuggugugcgaggUGCgCGAGGUGCCc -3'
miRNA:   3'- -CG-G-GGGAGGGCGg--------------GCGgGCUCCAUGG- -5'
29497 3' -65.2 NC_006151.1 + 52376 0.67 0.481325
Target:  5'- cGCCCCCggggcccgCgggggcggcgggcgCCGCCgCGCCCGAGaagucaaaGUGCUc -3'
miRNA:   3'- -CGGGGGa-------G--------------GGCGG-GCGGGCUC--------CAUGG- -5'
29497 3' -65.2 NC_006151.1 + 51078 0.71 0.279786
Target:  5'- gGCCUCCUCCgcuCGCCCGCCCcucuccGCCu -3'
miRNA:   3'- -CGGGGGAGG---GCGGGCGGGcucca-UGG- -5'
29497 3' -65.2 NC_006151.1 + 50858 0.78 0.083607
Target:  5'- gGCCgCCCUCCCGCgcccccggaccCCGuCCCGGGGccgGCCg -3'
miRNA:   3'- -CGG-GGGAGGGCG-----------GGC-GGGCUCCa--UGG- -5'
29497 3' -65.2 NC_006151.1 + 49139 0.68 0.421535
Target:  5'- uGCCCgCgCCCGCCCacggcugccuggagGCCUGGGcGcGCCg -3'
miRNA:   3'- -CGGGgGaGGGCGGG--------------CGGGCUC-CaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.