Results 101 - 120 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29497 | 3' | -65.2 | NC_006151.1 | + | 49044 | 0.67 | 0.466412 |
Target: 5'- gGCCCacgggcuggCCUUCagCGUCCGgCgCGGGGUGCCg -3' miRNA: 3'- -CGGG---------GGAGG--GCGGGCgG-GCUCCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 48844 | 0.68 | 0.383992 |
Target: 5'- gGCCCCCUCguggcgcgcgCUGCUggaGCCCGAGaucGCCa -3' miRNA: 3'- -CGGGGGAG----------GGCGGg--CGGGCUCca-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 48778 | 0.75 | 0.153882 |
Target: 5'- cGCCUCCgcCCCGCCCcccgacCCCGGGGcGCCc -3' miRNA: 3'- -CGGGGGa-GGGCGGGc-----GGGCUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 48700 | 0.67 | 0.475156 |
Target: 5'- gGCCcgaCCCUCcgccgCCGCCCgGCCCGcgaAGGgcacGCCc -3' miRNA: 3'- -CGG---GGGAG-----GGCGGG-CGGGC---UCCa---UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 48554 | 0.74 | 0.161768 |
Target: 5'- gGCCCCCcgccgaguaagagacCCUGCggccugCCGCCCGGGGUGCg -3' miRNA: 3'- -CGGGGGa--------------GGGCG------GGCGGGCUCCAUGg -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 48218 | 0.68 | 0.424006 |
Target: 5'- cGCCCCCcaCCCGCgcuccCCGgCgCGAGGaGCUg -3' miRNA: 3'- -CGGGGGa-GGGCG-----GGCgG-GCUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 46830 | 0.76 | 0.115174 |
Target: 5'- uGCCCCCgagacCgCCGCCC-CCCGGGGcggGCCu -3' miRNA: 3'- -CGGGGGa----G-GGCGGGcGGGCUCCa--UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 45925 | 0.66 | 0.520024 |
Target: 5'- -aCCCUgacgagCaCCGCCUGCCCGcuGUGCa -3' miRNA: 3'- cgGGGGa-----G-GGCGGGCGGGCucCAUGg -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 44870 | 0.74 | 0.165258 |
Target: 5'- cGCCCUCUCUCGCCCGaCCuCGGcGGUGu- -3' miRNA: 3'- -CGGGGGAGGGCGGGC-GG-GCU-CCAUgg -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 44105 | 0.67 | 0.466412 |
Target: 5'- aGCgCCCaUCCCcaucaaCCC-CCCGGGGgcgGCCa -3' miRNA: 3'- -CGgGGG-AGGGc-----GGGcGGGCUCCa--UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 44004 | 0.73 | 0.199352 |
Target: 5'- aCCCCCcCCCGCagcccCCGCCCcgcGGGGaGCCg -3' miRNA: 3'- cGGGGGaGGGCG-----GGCGGG---CUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 43965 | 0.75 | 0.150251 |
Target: 5'- cGCCCCgaCCCGCCCGCCUGcucUAUCa -3' miRNA: 3'- -CGGGGgaGGGCGGGCGGGCuccAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 43190 | 0.68 | 0.4077 |
Target: 5'- cGCCCCCa-CCGCCUGCaCCc-GGUuCCg -3' miRNA: 3'- -CGGGGGagGGCGGGCG-GGcuCCAuGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 42567 | 0.71 | 0.248746 |
Target: 5'- cCCCCCUCuccggcgccacgcgCCGCCCGucCCCGAGagGCCu -3' miRNA: 3'- cGGGGGAG--------------GGCGGGC--GGGCUCcaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 42225 | 0.66 | 0.493778 |
Target: 5'- cCCCCCUuuaagcCCCGCCCccuuuuuucgcggccCCCGGGGaGCg -3' miRNA: 3'- cGGGGGA------GGGCGGGc--------------GGGCUCCaUGg -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 40157 | 0.67 | 0.483981 |
Target: 5'- gGCCCCgCggCCCGCUCggGCCCaucaAGGUggagGCCa -3' miRNA: 3'- -CGGGG-Ga-GGGCGGG--CGGGc---UCCA----UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 40014 | 0.73 | 0.194776 |
Target: 5'- uGCCCCCUucgagaccagcgUCCGCgccgCCGCCgGGGGcGCCg -3' miRNA: 3'- -CGGGGGA------------GGGCG----GGCGGgCUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 39556 | 0.74 | 0.169215 |
Target: 5'- gGCCUCCUucgCCCGCCUGCaccCCGGGGccgaGCCg -3' miRNA: 3'- -CGGGGGA---GGGCGGGCG---GGCUCCa---UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 39454 | 0.69 | 0.368702 |
Target: 5'- gGCCgCCCagugcgCCgugCGCUgGCCCG-GGUGCCg -3' miRNA: 3'- -CGG-GGGa-----GG---GCGGgCGGGCuCCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 39248 | 0.68 | 0.399696 |
Target: 5'- cGCCCCgacaUCggCCGCCucaaCGCCCagGGGGUGCUg -3' miRNA: 3'- -CGGGGg---AG--GGCGG----GCGGG--CUCCAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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