Results 121 - 140 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29497 | 3' | -65.2 | NC_006151.1 | + | 39131 | 0.66 | 0.53844 |
Target: 5'- gGCgCCCCgcgCCCGgccugggaCCCGCgCCGcGGcgGCCu -3' miRNA: 3'- -CG-GGGGa--GGGC--------GGGCG-GGCuCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 38891 | 0.84 | 0.036385 |
Target: 5'- cGCCgCCUaCUGCCCGCCCGAGGUgGCCc -3' miRNA: 3'- -CGGgGGAgGGCGGGCGGGCUCCA-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 38579 | 0.67 | 0.432304 |
Target: 5'- cGCgCCCggggCCCGCCgC-CCCGGGG-ACg -3' miRNA: 3'- -CGgGGGa---GGGCGG-GcGGGCUCCaUGg -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 38523 | 0.67 | 0.457752 |
Target: 5'- aGCUCCCcCgCCGCCgGCCCGG---ACCc -3' miRNA: 3'- -CGGGGGaG-GGCGGgCGGGCUccaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 38405 | 0.75 | 0.13982 |
Target: 5'- cGCCCCCUCCgGCCUcCCCGGcuccGGgcCCu -3' miRNA: 3'- -CGGGGGAGGgCGGGcGGGCU----CCauGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 38330 | 0.69 | 0.353836 |
Target: 5'- cGCgCCCggCCUGCCCccgcucugGCCCGAGcaGCCc -3' miRNA: 3'- -CGgGGGa-GGGCGGG--------CGGGCUCcaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 38165 | 0.73 | 0.1859 |
Target: 5'- uGUCgCCCUCgUCGCCCGCaCCGuGGcGCCg -3' miRNA: 3'- -CGG-GGGAG-GGCGGGCG-GGCuCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 38121 | 0.69 | 0.346563 |
Target: 5'- aUCCCCggggCCgGCCCGgCCGAGcGgcggcagGCCg -3' miRNA: 3'- cGGGGGa---GGgCGGGCgGGCUC-Ca------UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 38060 | 0.8 | 0.060397 |
Target: 5'- cGCCCUCgggCCCGCCUGCCuCGAGGaggugacgGCCg -3' miRNA: 3'- -CGGGGGa--GGGCGGGCGG-GCUCCa-------UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 38022 | 0.68 | 0.391793 |
Target: 5'- uGCCCgCUCCggcugcccgCGCCCGCCCGc---GCCc -3' miRNA: 3'- -CGGGgGAGG---------GCGGGCGGGCuccaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 37925 | 0.69 | 0.368702 |
Target: 5'- cGCCgCCUUCgCCGCCgcgcaGCCCGGccGcGUGCCc -3' miRNA: 3'- -CGG-GGGAG-GGCGGg----CGGGCU--C-CAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 37467 | 0.66 | 0.501861 |
Target: 5'- gGCCCgCUaCCgCGCCgCGgCCGGGcccGUGCCc -3' miRNA: 3'- -CGGGgGA-GG-GCGG-GCgGGCUC---CAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 37319 | 0.67 | 0.487533 |
Target: 5'- gGCCCCCgccgaccgacgggCCGCugcucaccCCGCUCGGGGaGCCc -3' miRNA: 3'- -CGGGGGag-----------GGCG--------GGCGGGCUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 37239 | 0.7 | 0.325391 |
Target: 5'- gGCCCCggCCCcggaGCCCGCCCGgcccccgcgcAGGaagcGCCg -3' miRNA: 3'- -CGGGGgaGGG----CGGGCGGGC----------UCCa---UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 37137 | 0.75 | 0.150251 |
Target: 5'- cGCCCCa-CUCGCCCGCgCCGGGccGCCa -3' miRNA: 3'- -CGGGGgaGGGCGGGCG-GGCUCcaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 37008 | 0.67 | 0.483981 |
Target: 5'- cGCCCCCcgggccCCCGCcgCCGCCgCGcGGcgcucgGCCu -3' miRNA: 3'- -CGGGGGa-----GGGCG--GGCGG-GCuCCa-----UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 36885 | 0.68 | 0.406895 |
Target: 5'- cGCCCCCgcagagacagcCCCGCCggcgccgCGCCggaGAGGcGCCc -3' miRNA: 3'- -CGGGGGa----------GGGCGG-------GCGGg--CUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 36702 | 0.7 | 0.318551 |
Target: 5'- aGCCCCUgcucgacgagCCCG-CCGCCgCGAGGcgGCUc -3' miRNA: 3'- -CGGGGGa---------GGGCgGGCGG-GCUCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 36652 | 0.68 | 0.4077 |
Target: 5'- cGCCCCCU-CCGCCgGaggggaCCGcGGUcgucACCa -3' miRNA: 3'- -CGGGGGAgGGCGGgCg-----GGCuCCA----UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 35759 | 0.66 | 0.520024 |
Target: 5'- aGCCCUCgacggaCGCCCGacccaCCGAGGcucucgGCCc -3' miRNA: 3'- -CGGGGGagg---GCGGGCg----GGCUCCa-----UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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