Results 41 - 60 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29497 | 3' | -65.2 | NC_006151.1 | + | 109527 | 0.66 | 0.53844 |
Target: 5'- aGCCgUCUCagcagCGCCC-CCCGgAGGcGCCg -3' miRNA: 3'- -CGGgGGAGg----GCGGGcGGGC-UCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 18395 | 0.66 | 0.53844 |
Target: 5'- cGgCCCCUCguagCCGCuguccCCGCCgGGGGaggaggGCCg -3' miRNA: 3'- -CgGGGGAG----GGCG-----GGCGGgCUCCa-----UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 123931 | 0.66 | 0.53844 |
Target: 5'- gGCCgCCUCggccUCGCCgaCGCCCGggacGGGcGCCa -3' miRNA: 3'- -CGGgGGAG----GGCGG--GCGGGC----UCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 107519 | 0.66 | 0.53844 |
Target: 5'- cGCCCaCgCUCCCGCCguugGCCCc-GGcgGCCc -3' miRNA: 3'- -CGGG-G-GAGGGCGGg---CGGGcuCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 107815 | 0.66 | 0.539366 |
Target: 5'- aGCCCCCgccgccggucaucaaCCCGCCCuaCCCGGcgacggccccGGcGCCc -3' miRNA: 3'- -CGGGGGa--------------GGGCGGGc-GGGCU----------CCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 80611 | 0.66 | 0.529202 |
Target: 5'- cCCCCCUCCCGUCU-CCCGucucuCCc -3' miRNA: 3'- cGGGGGAGGGCGGGcGGGCuccauGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 34162 | 0.66 | 0.529202 |
Target: 5'- cCCCCCUCCCccucuGCCaCGCCCc----GCCa -3' miRNA: 3'- cGGGGGAGGG-----CGG-GCGGGcuccaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 109990 | 0.66 | 0.519109 |
Target: 5'- aCCCgCgagCCCGCCgaggaggCGCCCGAGcuggACCc -3' miRNA: 3'- cGGGgGa--GGGCGG-------GCGGGCUCca--UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 128525 | 0.66 | 0.519109 |
Target: 5'- cGCCCgagCCCgaggccacggcggGCCCGCCgGcgcGGUGCCg -3' miRNA: 3'- -CGGGggaGGG-------------CGGGCGGgCu--CCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 35759 | 0.66 | 0.520024 |
Target: 5'- aGCCCUCgacggaCGCCCGacccaCCGAGGcucucgGCCc -3' miRNA: 3'- -CGGGGGagg---GCGGGCg----GGCUCCa-----UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 142274 | 0.66 | 0.520024 |
Target: 5'- cGCCCCgUCCCGgCgGCCaGAccgGCCg -3' miRNA: 3'- -CGGGGgAGGGCgGgCGGgCUccaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 45925 | 0.66 | 0.520024 |
Target: 5'- -aCCCUgacgagCaCCGCCUGCCCGcuGUGCa -3' miRNA: 3'- cgGGGGa-----G-GGCGGGCGGGCucCAUGg -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 58244 | 0.66 | 0.520024 |
Target: 5'- cGCCgCCaCgCGCCgGCCCGcGG-GCCg -3' miRNA: 3'- -CGGgGGaGgGCGGgCGGGCuCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 27236 | 0.66 | 0.523688 |
Target: 5'- cGCgCaCCUCCUcggggucgggcggggGCCCGUacUCGGGGUGCUc -3' miRNA: 3'- -CGgG-GGAGGG---------------CGGGCG--GGCUCCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 12246 | 0.66 | 0.523688 |
Target: 5'- cCCCCCUCCUGCCuccauucaucaaucuCGUCC-AGGccgcggGCCc -3' miRNA: 3'- cGGGGGAGGGCGG---------------GCGGGcUCCa-----UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 5781 | 0.66 | 0.528282 |
Target: 5'- cCCCCCUCgCGggggaccaucUCCGCggggcugCCGAGGgGCCg -3' miRNA: 3'- cGGGGGAGgGC----------GGGCG-------GGCUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 7619 | 0.66 | 0.529202 |
Target: 5'- --aCCCUCCCGCgaCC-CCCGcGGUcGCCc -3' miRNA: 3'- cggGGGAGGGCG--GGcGGGCuCCA-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 26545 | 0.66 | 0.529202 |
Target: 5'- uUCCCCgucCCCGCCguCGUCCGAGcccgaGCCc -3' miRNA: 3'- cGGGGGa--GGGCGG--GCGGGCUCca---UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 7790 | 0.66 | 0.529202 |
Target: 5'- aGCCCggaCCCGCCCGgaCCCGgaaggaAGGaGCCg -3' miRNA: 3'- -CGGGggaGGGCGGGC--GGGC------UCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 30546 | 0.66 | 0.529202 |
Target: 5'- cCCCCCUCUCGuUCCGCgCCGcacGcGCCg -3' miRNA: 3'- cGGGGGAGGGC-GGGCG-GGCuc-CaUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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