Results 121 - 140 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29497 | 3' | -65.2 | NC_006151.1 | + | 114254 | 0.67 | 0.449179 |
Target: 5'- -aCCCCUCggaGCgCGCCCucgagGAGGUGCUc -3' miRNA: 3'- cgGGGGAGgg-CGgGCGGG-----CUCCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 32643 | 0.67 | 0.449179 |
Target: 5'- cCCCCCUCgCCGCCgGCCCcuucc-CCg -3' miRNA: 3'- cGGGGGAG-GGCGGgCGGGcuccauGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 129519 | 0.67 | 0.475156 |
Target: 5'- aGCCgCUUgCCGCCgacggggggGCCCGGGGccGCCg -3' miRNA: 3'- -CGGgGGAgGGCGGg--------CGGGCUCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 135057 | 0.67 | 0.475156 |
Target: 5'- uCCCCCUCCuCGucuuccCCCGCCuccucgggCGGGGgcggcgggGCCg -3' miRNA: 3'- cGGGGGAGG-GC------GGGCGG--------GCUCCa-------UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 48700 | 0.67 | 0.475156 |
Target: 5'- gGCCcgaCCCUCcgccgCCGCCCgGCCCGcgaAGGgcacGCCc -3' miRNA: 3'- -CGG---GGGAG-----GGCGGG-CGGGC---UCCa---UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 57453 | 0.66 | 0.501861 |
Target: 5'- gGCCCCCg--CGUCgGCC--AGGUGCCg -3' miRNA: 3'- -CGGGGGaggGCGGgCGGgcUCCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 42225 | 0.66 | 0.493778 |
Target: 5'- cCCCCCUuuaagcCCCGCCCccuuuuuucgcggccCCCGGGGaGCg -3' miRNA: 3'- cGGGGGA------GGGCGGGc--------------GGGCUCCaUGg -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 28210 | 0.66 | 0.492883 |
Target: 5'- cGCaCCCCUUuaUCGCCCcgUCGAGGggGCCg -3' miRNA: 3'- -CG-GGGGAG--GGCGGGcgGGCUCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 37319 | 0.67 | 0.487533 |
Target: 5'- gGCCCCCgccgaccgacgggCCGCugcucaccCCGCUCGGGGaGCCc -3' miRNA: 3'- -CGGGGGag-----------GGCG--------GGCGGGCUCCaUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 40157 | 0.67 | 0.483981 |
Target: 5'- gGCCCCgCggCCCGCUCggGCCCaucaAGGUggagGCCa -3' miRNA: 3'- -CGGGG-Ga-GGGCGGG--CGGGc---UCCA----UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 37008 | 0.67 | 0.483981 |
Target: 5'- cGCCCCCcgggccCCCGCcgCCGCCgCGcGGcgcucgGCCu -3' miRNA: 3'- -CGGGGGa-----GGGCG--GGCGG-GCuCCa-----UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 30729 | 0.67 | 0.483981 |
Target: 5'- aCCCUCUCaCGCggGCCCGGaGUGCCg -3' miRNA: 3'- cGGGGGAGgGCGggCGGGCUcCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 13723 | 0.67 | 0.483981 |
Target: 5'- uCCCCCauuggccggUCCCggacGCCCGuCCCGcGGgccggACCg -3' miRNA: 3'- cGGGGG---------AGGG----CGGGC-GGGCuCCa----UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 35104 | 0.67 | 0.483981 |
Target: 5'- -gCgCCUCgCGCCCGCgCGAGGg--- -3' miRNA: 3'- cgGgGGAGgGCGGGCGgGCUCCaugg -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 29173 | 0.67 | 0.483981 |
Target: 5'- cUCCCUUCCCggacGCCCGCUcuCGAGGa--- -3' miRNA: 3'- cGGGGGAGGG----CGGGCGG--GCUCCaugg -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 62451 | 0.67 | 0.483981 |
Target: 5'- cGCCUgCaucgCCCaCCgCGCCCGGGGcaGCCg -3' miRNA: 3'- -CGGGgGa---GGGcGG-GCGGGCUCCa-UGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 8710 | 0.67 | 0.483095 |
Target: 5'- cGUCUCCgUCuCCGCCguCGCCUcgguccgaggaggGGGGUGCCc -3' miRNA: 3'- -CGGGGG-AG-GGCGG--GCGGG-------------CUCCAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 63830 | 0.67 | 0.48221 |
Target: 5'- cGCCCUcgaagaaCUCCaCGCCCGgCCGGGcgauggaGUACa -3' miRNA: 3'- -CGGGG-------GAGG-GCGGGCgGGCUC-------CAUGg -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 52376 | 0.67 | 0.481325 |
Target: 5'- cGCCCCCggggcccgCgggggcggcgggcgCCGCCgCGCCCGAGaagucaaaGUGCUc -3' miRNA: 3'- -CGGGGGa-------G--------------GGCGG-GCGGGCUC--------CAUGG- -5' |
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29497 | 3' | -65.2 | NC_006151.1 | + | 141781 | 0.67 | 0.478676 |
Target: 5'- gGUUCUgUCCCGgggacgcgggucgguCCCGCCCcGAGGgcacggGCCg -3' miRNA: 3'- -CGGGGgAGGGC---------------GGGCGGG-CUCCa-----UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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