miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29497 5' -56.8 NC_006151.1 + 106191 0.66 0.856296
Target:  5'- cGCcGCugGAGCCGG----CGGUGCGg -3'
miRNA:   3'- -UGcUGugCUCGGCCuucuGCCACGUu -5'
29497 5' -56.8 NC_006151.1 + 113026 0.66 0.856296
Target:  5'- gACGACGCGugcGCCGGGugcugcGCGGcgGCGGa -3'
miRNA:   3'- -UGCUGUGCu--CGGCCUuc----UGCCa-CGUU- -5'
29497 5' -56.8 NC_006151.1 + 121906 0.66 0.856296
Target:  5'- cGCGuacGCGCGGGCCgaGGggGAcCGcGUGCu- -3'
miRNA:   3'- -UGC---UGUGCUCGG--CCuuCU-GC-CACGuu -5'
29497 5' -56.8 NC_006151.1 + 81749 0.66 0.856296
Target:  5'- gGCGGCGCgGAGCUGGuccGCGG-GCGc -3'
miRNA:   3'- -UGCUGUG-CUCGGCCuucUGCCaCGUu -5'
29497 5' -56.8 NC_006151.1 + 133738 0.66 0.848396
Target:  5'- gGCGA-GCGAGUgGGGucGGGCGcGUGCGGa -3'
miRNA:   3'- -UGCUgUGCUCGgCCU--UCUGC-CACGUU- -5'
29497 5' -56.8 NC_006151.1 + 75406 0.66 0.848396
Target:  5'- uGCGuGCGCGGGuCCGGGAGGCccggcgugGGcGCGAa -3'
miRNA:   3'- -UGC-UGUGCUC-GGCCUUCUG--------CCaCGUU- -5'
29497 5' -56.8 NC_006151.1 + 100920 0.66 0.84356
Target:  5'- gACGACGCGAGCgCGGGcgugccccugcucgcGcaaacGugGGUGCc- -3'
miRNA:   3'- -UGCUGUGCUCG-GCCU---------------U-----CugCCACGuu -5'
29497 5' -56.8 NC_006151.1 + 102509 0.66 0.84356
Target:  5'- cGCGGCGCGGGaccCCGGcggcgucuacgaccAGACGGUGguGg -3'
miRNA:   3'- -UGCUGUGCUC---GGCCu-------------UCUGCCACguU- -5'
29497 5' -56.8 NC_006151.1 + 53482 0.66 0.840297
Target:  5'- cCGGCAgCGAGCCGuggcacgcGAAGGCcaGGUGCu- -3'
miRNA:   3'- uGCUGU-GCUCGGC--------CUUCUG--CCACGuu -5'
29497 5' -56.8 NC_006151.1 + 78578 0.66 0.840297
Target:  5'- cGCGGCgACGGGCCuGGAGcuGGCGGU-CAu -3'
miRNA:   3'- -UGCUG-UGCUCGG-CCUU--CUGCCAcGUu -5'
29497 5' -56.8 NC_006151.1 + 63406 0.66 0.832007
Target:  5'- aGCaGCACGGGCaCGGcgcAGGCGGgcgGCAc -3'
miRNA:   3'- -UGcUGUGCUCG-GCCu--UCUGCCa--CGUu -5'
29497 5' -56.8 NC_006151.1 + 23889 0.67 0.823534
Target:  5'- aGCGGguuCACGGGCUGGgcGuCGGUcGCGGg -3'
miRNA:   3'- -UGCU---GUGCUCGGCCuuCuGCCA-CGUU- -5'
29497 5' -56.8 NC_006151.1 + 55378 0.67 0.823534
Target:  5'- cGCGAgCGCGAGCaGGAGGuGCGGcgccUGCGc -3'
miRNA:   3'- -UGCU-GUGCUCGgCCUUC-UGCC----ACGUu -5'
29497 5' -56.8 NC_006151.1 + 76018 0.67 0.823534
Target:  5'- cCGACACGAGCgCGGcgcAGGccacGCGGUccGCGAg -3'
miRNA:   3'- uGCUGUGCUCG-GCC---UUC----UGCCA--CGUU- -5'
29497 5' -56.8 NC_006151.1 + 29070 0.67 0.814884
Target:  5'- gGCGcCGCGGGCCccGAGACGGccgcgGCGAc -3'
miRNA:   3'- -UGCuGUGCUCGGccUUCUGCCa----CGUU- -5'
29497 5' -56.8 NC_006151.1 + 88965 0.67 0.806066
Target:  5'- cCGGCGC--GCgGGAAGACGGcGCAc -3'
miRNA:   3'- uGCUGUGcuCGgCCUUCUGCCaCGUu -5'
29497 5' -56.8 NC_006151.1 + 139742 0.67 0.806066
Target:  5'- gGCGACAgGAGgCGGAucguccGGACGGcggGCc- -3'
miRNA:   3'- -UGCUGUgCUCgGCCU------UCUGCCa--CGuu -5'
29497 5' -56.8 NC_006151.1 + 102974 0.67 0.806066
Target:  5'- gACGGCGCGcuGCUGGcgcagcugcugGAGGCGG-GCGAg -3'
miRNA:   3'- -UGCUGUGCu-CGGCC-----------UUCUGCCaCGUU- -5'
29497 5' -56.8 NC_006151.1 + 4319 0.67 0.80339
Target:  5'- -gGGCACGcGGCCGGGcugcgcggcggcgaAGGCGGcGCGGa -3'
miRNA:   3'- ugCUGUGC-UCGGCCU--------------UCUGCCaCGUU- -5'
29497 5' -56.8 NC_006151.1 + 89488 0.67 0.797089
Target:  5'- cGCGGCgGCGAGCCGGuacgcGCGGgugugGCGc -3'
miRNA:   3'- -UGCUG-UGCUCGGCCuuc--UGCCa----CGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.