miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29498 3' -68.8 NC_006151.1 + 27998 0.68 0.29489
Target:  5'- uCCCGGCCCacccCGacCGGGGGauCCCCCgcaUCCg -3'
miRNA:   3'- -GGGCUGGGc---GC--GCCCCCc-GGGGG---AGG- -5'
29498 3' -68.8 NC_006151.1 + 28302 0.68 0.29489
Target:  5'- cCCCauuGGCCgGCGCGuccccGGGGcGCCCgCCcCCg -3'
miRNA:   3'- -GGG---CUGGgCGCGC-----CCCC-CGGG-GGaGG- -5'
29498 3' -68.8 NC_006151.1 + 28516 0.67 0.327252
Target:  5'- gUCCGGCCCGCGgGacGGGCgUCCgggaCCg -3'
miRNA:   3'- -GGGCUGGGCGCgCccCCCGgGGGa---GG- -5'
29498 3' -68.8 NC_006151.1 + 28797 0.67 0.320574
Target:  5'- gUCCGGCCCGCGggacgggcgucCGGGaccggccaaugcGGGCCCCg--- -3'
miRNA:   3'- -GGGCUGGGCGC-----------GCCC------------CCCGGGGgagg -5'
29498 3' -68.8 NC_006151.1 + 31206 0.71 0.190177
Target:  5'- -gUGGCCCGCGUccaGGccGGGCCCCCggCCg -3'
miRNA:   3'- ggGCUGGGCGCG---CCc-CCCGGGGGa-GG- -5'
29498 3' -68.8 NC_006151.1 + 31237 0.74 0.116775
Target:  5'- gCCGGCCCGgcgagcgaGCGGgcgggcgagccGGGGCCCCCggcCCg -3'
miRNA:   3'- gGGCUGGGCg-------CGCC-----------CCCCGGGGGa--GG- -5'
29498 3' -68.8 NC_006151.1 + 31771 0.69 0.248387
Target:  5'- gCgGGCgCGCGCcGGGcGGCUCuCCUCCu -3'
miRNA:   3'- gGgCUGgGCGCGcCCC-CCGGG-GGAGG- -5'
29498 3' -68.8 NC_006151.1 + 31918 0.67 0.320574
Target:  5'- uCCCGcguCCUGCGUcacgggaccGGGGGGUCCCgCgugaugacgCCg -3'
miRNA:   3'- -GGGCu--GGGCGCG---------CCCCCCGGGG-Ga--------GG- -5'
29498 3' -68.8 NC_006151.1 + 32873 1.11 0.00021
Target:  5'- gCCCGACCCGCGCGGGGGGCCCCCUCCu -3'
miRNA:   3'- -GGGCUGGGCGCGCCCCCCGGGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 33882 0.73 0.13771
Target:  5'- uCCCGGaccccCCCGgGgGcGGGGGCCUcgcgCCUCCg -3'
miRNA:   3'- -GGGCU-----GGGCgCgC-CCCCCGGG----GGAGG- -5'
29498 3' -68.8 NC_006151.1 + 33969 0.66 0.391915
Target:  5'- aCgCGgcGCCCGCGCGGGGacaCUCUUUCCc -3'
miRNA:   3'- -GgGC--UGGGCGCGCCCCcc-GGGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 34024 0.7 0.227499
Target:  5'- gCCCGGCCCucccCGCcgggaaGGGGacccGGCCCUCUUCg -3'
miRNA:   3'- -GGGCUGGGc---GCG------CCCC----CCGGGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 36007 0.66 0.407371
Target:  5'- gUCCGGcCCCGacgGCGGcagccaGGGCUCCCggcgCCg -3'
miRNA:   3'- -GGGCU-GGGCg--CGCCc-----CCCGGGGGa---GG- -5'
29498 3' -68.8 NC_006151.1 + 36323 0.69 0.237751
Target:  5'- cCCCGGuCCCGgGcCGGcuccGGGCCCCggCCg -3'
miRNA:   3'- -GGGCU-GGGCgC-GCCc---CCCGGGGgaGG- -5'
29498 3' -68.8 NC_006151.1 + 36360 0.71 0.173611
Target:  5'- cCCCGgcagcACUCGCaGCGGcagaggccGGGGCCCCCggcggCCc -3'
miRNA:   3'- -GGGC-----UGGGCG-CGCC--------CCCCGGGGGa----GG- -5'
29498 3' -68.8 NC_006151.1 + 36580 0.67 0.327252
Target:  5'- gCCGGCaCG-GC-GGGGGCCCgCUUCCc -3'
miRNA:   3'- gGGCUGgGCgCGcCCCCCGGG-GGAGG- -5'
29498 3' -68.8 NC_006151.1 + 36630 0.73 0.134521
Target:  5'- uCUCGgcGCCCgGCgGCGGcGGcGCCCCCUCCg -3'
miRNA:   3'- -GGGC--UGGG-CG-CGCCcCC-CGGGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 36859 0.7 0.232578
Target:  5'- aCUCGGCCuCGCcggggacgGCGGGGcGCCCCCg-- -3'
miRNA:   3'- -GGGCUGG-GCG--------CGCCCCcCGGGGGagg -5'
29498 3' -68.8 NC_006151.1 + 36906 0.75 0.106183
Target:  5'- gCCGGCgCCGCGCcGGaGaGGCgCCCUCCg -3'
miRNA:   3'- gGGCUG-GGCGCGcCC-C-CCGgGGGAGG- -5'
29498 3' -68.8 NC_006151.1 + 37024 0.73 0.140969
Target:  5'- gCCGcCgCCGCGCGGcGcucGGCCUCCUCCu -3'
miRNA:   3'- gGGCuG-GGCGCGCC-Cc--CCGGGGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.