Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29498 | 3' | -68.8 | NC_006151.1 | + | 32873 | 1.11 | 0.00021 |
Target: 5'- gCCCGACCCGCGCGGGGGGCCCCCUCCu -3' miRNA: 3'- -GGGCUGGGCGCGCCCCCCGGGGGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 38384 | 0.8 | 0.042119 |
Target: 5'- gCCGGCgCCgGCgGCGGcGGGcGCCCCCUCCg -3' miRNA: 3'- gGGCUG-GG-CG-CGCC-CCC-CGGGGGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 137401 | 0.79 | 0.046486 |
Target: 5'- gCCUG-CCCGC-CGGGGGGCgCCCUCg -3' miRNA: 3'- -GGGCuGGGCGcGCCCCCCGgGGGAGg -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 45527 | 0.77 | 0.067141 |
Target: 5'- gUCGACCCacCGCGGGaGGGCCCgCUUCCc -3' miRNA: 3'- gGGCUGGGc-GCGCCC-CCCGGG-GGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 5651 | 0.77 | 0.066167 |
Target: 5'- aCCGGCCCgGCgGCGGGggaggcuggggaagcGGGCCCCCgCCg -3' miRNA: 3'- gGGCUGGG-CG-CGCCC---------------CCCGGGGGaGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 117522 | 0.76 | 0.087653 |
Target: 5'- -aCGGgCCGCuC-GGGGGCCCCCUCCc -3' miRNA: 3'- ggGCUgGGCGcGcCCCCCGGGGGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 5332 | 0.75 | 0.098838 |
Target: 5'- gCCgCGGCCgCG-GCGGaGGGcGCCCUCUCCg -3' miRNA: 3'- -GG-GCUGG-GCgCGCC-CCC-CGGGGGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 36906 | 0.75 | 0.106183 |
Target: 5'- gCCGGCgCCGCGCcGGaGaGGCgCCCUCCg -3' miRNA: 3'- gGGCUG-GGCGCGcCC-C-CCGgGGGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 124674 | 0.74 | 0.122433 |
Target: 5'- -aCGGCCUGCGCGaGGGGGCCCa---- -3' miRNA: 3'- ggGCUGGGCGCGC-CCCCCGGGggagg -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 9034 | 0.74 | 0.114038 |
Target: 5'- uCCCG-CCCGC-CGGGGcGCCCCgcgugCUCCg -3' miRNA: 3'- -GGGCuGGGCGcGCCCCcCGGGG-----GAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 95966 | 0.74 | 0.119573 |
Target: 5'- gCCCGACgCCGcCGCGgcgcagcaggauGGGGGCCaCCUcgUCCg -3' miRNA: 3'- -GGGCUG-GGC-GCGC------------CCCCCGG-GGG--AGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 9389 | 0.74 | 0.108743 |
Target: 5'- gCCC--CCCGCGCGGGucGGGCCUUCUUCc -3' miRNA: 3'- -GGGcuGGGCGCGCCC--CCCGGGGGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 127725 | 0.74 | 0.122433 |
Target: 5'- cCCCGGcgucCCCGuCGCGGGcGGGaaccggucauCCUCCUCCu -3' miRNA: 3'- -GGGCU----GGGC-GCGCCC-CCC----------GGGGGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 40230 | 0.74 | 0.114038 |
Target: 5'- cCCCuACCUGCugcuccgcugaGCGGGGcGCCCCCUCg -3' miRNA: 3'- -GGGcUGGGCG-----------CGCCCCcCGGGGGAGg -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 31237 | 0.74 | 0.116775 |
Target: 5'- gCCGGCCCGgcgagcgaGCGGgcgggcgagccGGGGCCCCCggcCCg -3' miRNA: 3'- gGGCUGGGCg-------CGCC-----------CCCCGGGGGa--GG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 4041 | 0.73 | 0.125357 |
Target: 5'- -gCGGCCU-CGCGGGcgcGGGCCCCgUCCa -3' miRNA: 3'- ggGCUGGGcGCGCCC---CCCGGGGgAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 37183 | 0.73 | 0.144298 |
Target: 5'- gCCgCGGCCC-CGCGGcccucGGCCUCCUCCg -3' miRNA: 3'- -GG-GCUGGGcGCGCCcc---CCGGGGGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 37024 | 0.73 | 0.140969 |
Target: 5'- gCCGcCgCCGCGCGGcGcucGGCCUCCUCCu -3' miRNA: 3'- gGGCuG-GGCGCGCC-Cc--CCGGGGGAGG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 49210 | 0.73 | 0.125357 |
Target: 5'- aCCGugCgGCGCGGGGuccccGGCUCCCacgCCc -3' miRNA: 3'- gGGCugGgCGCGCCCC-----CCGGGGGa--GG- -5' |
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29498 | 3' | -68.8 | NC_006151.1 | + | 39531 | 0.73 | 0.1314 |
Target: 5'- gCCCGgccugcuucGCCCGCGUGGa-GGCCUCCUUCg -3' miRNA: 3'- -GGGC---------UGGGCGCGCCccCCGGGGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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